Query= MSMg01no161_j14.b1 MSMg01no161_j14.b1 CHROMAT_FILE:
MSMg01no161_j14.b1 PHD_FILE: MSMg01no161_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:23 2005
(266 letters)
>mm_chr2_153361036_153361701
Length = 666
Score = 480 bits (248), Expect = e-140
Identities = 260/266 (97%), Gaps = 4/266 (1%)
Strand = Plus / Minus
Query: 1 aatctctcttctattctttgccgtgaagacttccgtctactgaaggccctcgagtttaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatctctcttctattctttgctgtgaagacttccgtctactgaaggccctcgagtttaaa 248
Query: 61 atctcagtcttggcatgtagcttagtaagcagagaattcctaagccacacacacctatac 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atctcagtctgggcatgtagcttagtaagcagagaattcctaagccacacacacctatac 188
Query: 121 tcctagtacttgaaaatggagtcagaaagaagttcaaggtcatactcagatacatagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcctagtacttgaaaatggagtcagaaagaagttcaaggtcatactcagatacatagtat 128
Query: 181 gaggccagctagagacacttgagactttatgtcaaaaaaaaaaaaaaaaaaaaagccagc 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 127 gaggccagctagagacacttgagactttatgtc----aaaaaaaaaaaaaaaaagccagc 72
Query: 241 ttagtgccacagaggctgagcagtat 266
||||||||||||||||||||||||||
Sbjct: 71 ttagtgccacagaggctgagcagtat 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no161_j14.g1 MSMg01no161_j14.g1 CHROMAT_FILE:
MSMg01no161_j14.g1 PHD_FILE: MSMg01no161_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:23 2005
(412 letters)
>mm_chr2_153232313_153233124
Length = 812
Score = 702 bits (363), Expect = 0.0
Identities = 375/379 (98%), Gaps = 2/379 (0%)
Strand = Plus / Plus
Query: 2 tttttttt-ccaaactcatgataatcaacttattcccagccattttcctgtaatgtttcc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttttttcccaaactcatgataatcaacttattcccagccattttcctgtaatgtttcc 261
Query: 61 tacaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtgct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtgct 321
Query: 121 agaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttggat 381
Query: 181 gtcagttactgagtgtttagaactaggttttttccccaggctcttagcaattgctaagga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 382 gtcagttactgagtgtttagaactaggttttttccc-aggctcttagcaattgctaagga 440
Query: 241 gcttagatttggtcagttggccaggcatcaagccagtaggacagggcacagcacacgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttagatttggtcagttggccaggcatcaagccagtaggacagggcacagcacacgttt 500
Query: 301 cattgtcacacagctgcagactaaatcttgtttggttgatgactgaacttaggcaagacg 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cattgtcacacagctgcagactaaatcttgcttggttgatgactgaacttaggcaagacg 560
Query: 361 tggcactcggtatacctct 379
|||||||||||||||||||
Sbjct: 561 tggcactcggtatacctct 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
