BAC Information

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BAC

Clone NameMSMg01-162J04
Chromosome2 (Build37)
Map Location 88,428,110 - 88,428,387
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528
Downstream geneOlfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162J04.T7 (MSMg01no162_j04.b1)MSMg01-162J04.TJ (MSMg01no162_j04.g1)
ACCAG361658AG361659
length689789
length of high quality
(start - end)		---278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no162_j04.b1 PHD_FILE: MSMg01no162_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:58 2005CHROMAT_FILE: MSMg01no162_j04.g1 PHD_FILE: MSMg01no162_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAAATTGCGGCGCGANNNNNNNNNNTTCGNACCCGCNNGGAANNNNN
NNNTTGCTTACACAGAACAAAAAAANAANNNNNNNNNNNNNNNNNNGGNN
TTTTTTCCTTTCTCTCATATATAACAAGAAAAAANANNNANNNANANANN
NNNNNNGANGANNAAGAGGGNGGAAAAAAGAAAAGAAAAAGAGGNANAAA
TGGAGAAAATGTTACTTACAAGACCAGTTTTTTTTTTNAGAGAAAAAGAA
GAGAGAAAAGCAGAAAGAAGTGGACACACTAACACANAAATTTGCTCGGT
TTTACCAGGAAGAGAAAAAANAAGAAAAAAGTTGTTTTTTTCCCCCCCCC
CCCCCCAGAGGAAAAAANNNAANNNNNNNNNNNGGNNAAGANGAAAGGAA
AAAAAAAAAGGGGGGGGGGTGGGGGTGGGGGGNGNGNGNNGGGATTNNNG
GTNNNNNTGAAGNTTGGTGTGNTAAAAAAAAATTATGGTTAGACAGGGTT
TTAGAGGAAGATTATAAAAAGGGGATAGAGAAAAGGAAGAAAAAAAGAGA
GGAAAGGATAGAAGGGAGAAAGTTTGGGGGGATAAANGAAGATGAGAAAA
AATTTAAAGAAGGAATTTTGTTTTTCTCTGTAAAAAAAAAGGAATCCAGT
ACGAGAAAAGGATTAAAAACAATGATTAGAAAATGTGGG

CGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGCACTTCATTAATAAACATA
CAATTCTGTAGAAGCACATTATGTTCAGATACAATTATGTTTCAATTTTT
AAAAATTTAAGATAGATCTAATGTCTATTGTAAGTATTTACATTTGGTTA
ATTTACTGTATTTTGTATATAGGAAGATTGAAGACAATGTTAAAACTTAT
ATACTTTTCTGTTTTAACATCCAGAATACTGTGTTTTATAAAATTGGTTT
GATATAAGATATAATACATATTTATCATATTCTACCCCCATATTTATTAT
TTTTGCTTTCTCTTTATTGCCGCCCCCCTCCCCCCATTTCGCAAGACAGG
TTAACTTTCTATTATTTACCTCCCTTAACAAAAAAAACAATCTTATGAGT
CTTCCCGGACCTTTAAATTTGAACGTGGCACTTCTTTGAAAAAATATCAT
GCCCCCCCCACTCCATTTACCTACCCTCCATTAAAAGAAATTAAACACCG
GTCCAACCCTGCCTTTAAATAAATTTTCCCCCATTTGTAAAATTGCATCG
CTTCCCCGCCCCGTTCTCTTTCCACCCAACGTCCAACCCACTCCTTCTCC
TAAAATTTAATGGCGCCATATGGCCACCCAAAAAATTGCTAACACCTCCC
TTTCTCTGCATTTTTATTCCTTGCCCTCACCATCTTTTACTCTTCTTTAA
CCCCATTCACATTTCTTTAAAACACACCCCCTTATAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_j04.g1 MSMg01no162_j04.g1 CHROMAT_FILE:
MSMg01no162_j04.g1 PHD_FILE: MSMg01no162_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:58 2005
         (278 letters)



>mm_chr2_88427910_88428587
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagcacttcattaataaacatacaattctgtagaagcacattatgttcagatacaat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcagagcacttcattaataaacatacaattctgtagaagcacaatatgttcagatacaat 260

                                                                       
Query: 61  tatgtttcaatttttaaaaatttaagatagatctaatgtctattgtaagtatttacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtttcaatttttaaaaatttaagatagatctaatgtctattgtaagtatttacattt 320

                                                                       
Query: 121 ggttaatttactgtattttgtatataggaagattgaagacaatgttaaaacttatatact 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttaatttactgtattttgtatatgggaagattgaagacaatgttaaaacttatatact 380

                                                                       
Query: 181 tttctgttttaacatccagaatactgtgttttataaaattggtttgatataagatataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctgttttaacatccagaatactgtgttttataaaattggtttgatataagatataat 440

                                                 
Query: 241 acatatttatcatattctacccccatatttattatttt 278
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 acacatttatcatattctacccccatatttattatttt 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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