BAC Information

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BAC

Clone NameMSMg01-162O23
Chromosome2 (Build37)
Map Location 65,817,206 - 65,817,799
singlet/doubletsinglet
Overlap geneA330102K23Rik
Upstream geneGrb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
Downstream geneGalnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162O23.T7 (MSMg01no162_o23.b1)MSMg01-162O23.TJ (MSMg01no162_o23.g1)
ACCAG361902AG361903
length704706
length of high quality
(start - end)
598 (45 - 642)276 (431 - 706)
definitionCHROMAT_FILE: MSMg01no162_o23.b1 PHD_FILE: MSMg01no162_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:25 2005CHROMAT_FILE: MSMg01no162_o23.g1 PHD_FILE: MSMg01no162_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGTTTCCTGGGCCTTCTGTGCTCAGGGACCATTAGACACACTC
TGGGAATGCCCACGTGAACACAACATCCAGTGGGAATGCCCACGTGAAGA
GAACGTCCGGTCACAATAGTGAAAGGAACATAGATGCATAAGAAAACATA
CACAGCAGCTAGACCAGTGTTAGAATGCCTCCCACCTGCAGGCCATACCC
GTTCACCCAGGTTAGCATAACTGCTGACACAACTTCATGTGGGCTGCCAG
TGAGGACTGTGGTTCCTATCTTTGTGCTCAGAATGCATAGCACAAGGCCT
AGGTAATGGGACTTTCCTCATGTCTCTTCCTCCTCTAACTTCTCTTTCTC
TGCTGAACATCCATCCATCATTCTCTCATTCTTATCCGTCATTTCCTTTC
TGGAGAGTCCACATTAACACATTAGGCAGGATTCTGTGCATTAGAGCCCC
TGTGGAGAGAATGAGCAAGGCCCCCGGGCAATCTGGTCTACCATTATAAC
CCAAGTGCCAAGAACCATACATTACAGACAAAATAAAAGCTCAATCTATT
CACTCAAATCATATCTAATAACAATATTCTATAAGTGAAGATACGTAGAA
TTAATGAGTTGGTTGAACTCATAGCATGACCTTGGGGATGTAGGTAAGAT
TTGG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCACAAAAAAATTCTCACTTTTACCACCTCTCATAGCTGGGC
GCTTTGTAGAGGATGGTTCGGTCATTGGGACAGTTCCACTGAGAGAATAA
TAAGAATCCATTCCATGTTCTGTCCCTGCCTTTGCTTTCCAGCAACCACG
AAGTGAGCATGTACTTTGTCCTCTAGCATGTACTTCGTCGTGATGGGGTG
CCTCTCAAAAGACCTAAAATCAACTGGGGGGGGGGCGGGAGCCAGCAACC
ATGGACCCAAATCTCATAATCTCCGAATTGAGAGAGTGTAGACATGAGAA
ATATTTANATANTCTTTCCCACCCCCTGAATTAATTCTAGAGCTAAATAT
TAGTGACCATAGCCCAGAAAAACAAATATGGGTTACCTCAAACTCTACGC
ATTGACATGACATTCGTCTCATGACGTTTTTTGTAGTAACAGAACAAAGA
AAGTCGTAAATCGGGACACTCTTTAAAAGCCTCTGTGGAAGTACCAGGCT
GACGGGTGTCAACAACGTAGAGAACATTCTTAGCTCCGGGTTGGTAGAAG
CTAGAAGTCTGCTAAGTTAAGTCATGGCAAAGGTTTCACATGACAGAAGC
ATGTCTACTCAGACCGAAAGCTGGACAAGGGATGGCTATCAAGGAACCCA
AAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_o23.b1 MSMg01no162_o23.b1 CHROMAT_FILE:
MSMg01no162_o23.b1 PHD_FILE: MSMg01no162_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:25 2005
         (598 letters)



>mm_chr2_65817002_65817999
          Length = 998

 Score = 1052 bits (544), Expect = 0.0
 Identities = 582/596 (97%), Gaps = 4/596 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccagtttcctgggccttctgtgctcagggaccattagacacactctgggaatg 64
           |||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattcaccagcctgctgggtcttctgtgctcagggaccattagacacactctgggaatg 739

                                                                       
Query: 65  cccacgtgaacacaacatccagtgggaatgcccacgtgaagagaacgtccggtcacaata 124
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cccacgtgaagagaacatccagtgggaatgcccacgtgaagagaacgtccggtcacaata 679

                                                                       
Query: 125 gtgaaaggaacatagatgcataagaaaacatacacagcagctagaccagtgttagaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgaaaggaacatagatgcataagaaaacatacacagcagctagaccagtgttagaatgc 619

                                                                       
Query: 185 ctcccacctgcaggccata--cccgttcacccaggttagcataactgctgacacaacttc 242
           |||||||||||||||||||  |||  |||||||||| ||| |||||||||||||| ||||
Sbjct: 618 ctcccacctgcaggccatatcccc--tcacccaggtgagcgtaactgctgacacaccttc 561

                                                                       
Query: 243 atgtgggctgccagtgaggactgtggttcctatctttgtgctcagaatgcatagcacaag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtgggctgccagtgaggactgtggttcctatctttgtgctcagaatgcatagcacaag 501

                                                                       
Query: 303 gcctaggtaatgggactttcctcatgtctcttcctcctctaacttctctttctctgctga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcctaggtaatgggactttcctcatgtctcttcctcctctaacttctctttctctgctga 441

                                                                       
Query: 363 acatccatccatcattctctcattcttatccgtcatttcctttctggagagtccacatta 422
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatccattcatcattctctcattcttatccgtcatttcctttctggagagtccacatta 381

                                                                       
Query: 423 acacattaggcaggattctgtgcattagagcccctgtggagagaatgagcaaggcccccg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acacattaggcaggattctgtgcattagagcccctgtggagagaatgagcaaggcccccg 321

                                                                       
Query: 483 ggcaatctggtctaccattataacccaagtgccaagaaccatacattacagacaaaataa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcaatctggtctaccattataacccaagtgccaagaaccatacattacagacaaaataa 261

                                                                   
Query: 543 aagctcaatctattcactcaaatcatatctaataacaatattctataagtgaagat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagctcaatctattcactcaaatcatatctaataacaatattctataagtgaagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)