Query= MSMg01no162_o24.b1 MSMg01no162_o24.b1 CHROMAT_FILE:
MSMg01no162_o24.b1 PHD_FILE: MSMg01no162_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:25 2005
(311 letters)
>mm_chr2_164851746_164852462
Length = 717
Score = 555 bits (287), Expect = e-162
Identities = 304/313 (97%), Gaps = 6/313 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcaccctgatctttcatgt------atggctctcctacttcttgtaacatgtt 58
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 517 gaattcttcaccctgatctttcatgttttaaaatggctctcctacttcttgtaacatgtt 458
Query: 59 ttcatgattattttcccagttgtttccttttgctgtaaatcccttcagatgttggttttc 118
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttcatgattattttcccagttctttccttttgctgtaaatcccttcagatgttggttttc 398
Query: 119 ttttcttttttttagatgttggttttctagacttaaaaatcttaatgagaagtgctttta 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttttcttttttttagatgttggttttctagacttaaaaatcttaatgagaagtgctttta 338
Query: 179 atggtgaagctttcagaagactgcttagaaatcacagatgttccagccaaggttatatat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atggtgaagctttcagaagactgcttagaaatcacagatgttccagccaaggttatatat 278
Query: 239 cacctctgattatggtgatactgagtagcgctcattttgctgataaaaattattaaactg 298
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 277 cgcctctgattatggtgatactgagtagcactcattttgctgataaaaattattaaactg 218
Query: 299 tacaaagtagcat 311
|||||||||||||
Sbjct: 217 tacaaagtagcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 717
Length adjustment: 9
Effective length of query: 302
Effective length of database: 708
Effective search space: 213816
Effective search space used: 213816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_o24.g1 MSMg01no162_o24.g1 CHROMAT_FILE:
MSMg01no162_o24.g1 PHD_FILE: MSMg01no162_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:25 2005
(284 letters)
>mm_chr2_164692523_164693206
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 1 aaggatgggtggatgtcaccatgtgtgacccctcaaagggaggagattccgtggcgcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggatgggtggatgtcaccatgtgtgacccctcaaagggaggagattccgtggcgcggt 260
Query: 61 ggcagtggccttgtgggccctggcctaattccccgctgagcctctaagctcttttttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagtggccttgtgggccctggcctaattccccgctgagcctctaagctcttttttgct 320
Query: 121 tcctgctggcacgtctgtctctcgcatttctccagggttatgtggagttggtctgcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgctggcacgtctgtctctcgcatttctccagggttatgtggagttggtctgcagcc 380
Query: 181 aggaatgtcatacttccctaatctcttctgaggctctgcagagccctatggtcatgggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaatgtcatacttccctaatctcttctgaggctctgcagagccctatggtcatgggag 440
Query: 241 gtgccccctggggatctcagtttgctgtgcggacatctctactt 284
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtgccccctggggatctcagttggctgtgcggacatctctactt 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
