BAC Information

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BAC

Clone NameMSMg01-163J07
Chromosome2 (Build37)
Map Location 119,427,081 - 119,610,047
singlet/doubletdoublet
Overlap geneOip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1
Upstream geneBub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307
Downstream geneTyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163J07.T7 (MSMg01no163_j07.b1)MSMg01-163J07.TJ (MSMg01no163_j07.g1)
ACCAG362338AG362339
length732732
length of high quality
(start - end)
583 (51 - 633)347 (386 - 732)
definitionCHROMAT_FILE: MSMg01no163_j07.b1 PHD_FILE: MSMg01no163_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:12 2005CHROMAT_FILE: MSMg01no163_j07.g1 PHD_FILE: MSMg01no163_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,609,513 - 119,610,047)(119,427,081 - 119,427,427)
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTAGGTACACCAGGCTGGCCTTGAATTCACAGAGATCTA
CCTGCCTTTGCCTCCCAAGTGCTGGGATCAAAGGTGTGCGCCACCATGCC
CCACTCTTGTTTGTTTTTTGACACAGGGTTTTATGTACTTCAGGCTGGCT
TTTAAACTTACCATATAGCCAAGGGTAACCTGGAACTTTCTACCCTCTTG
CTTTTTACCCCAAGTGCTGGGGGTTATAGACAGGTGCAGCCGCCCTCGCG
TTGGCTGTAAATAAGTTTACTAGACTGATGGCCAGAGAGGGCTGATAGAG
AAAGAAATGCCTTTGAGCTCACCTCCCTGCATGGAAAAGATAAAGACCAC
CAGGGTTCGGTTGTAACCGCTGCTGTTTTGATGCTTTAGGGGTGGATGAG
AGGGAGTACTGGAAGGAGTCGTACAAAGGGCACAGCTCCAGGGCCATGAT
GCTGTCCAGACCGAAGCCTGGAGAGTCAGAGGTGGACCTGCTGCGCTTCC
AGAGCCAGTTCCTTGAGGCTGGTGCAGCCCCGGCGGTGCAGCTGGTGAAG
GGGAGTAGGAGGCATGGTGATGCTCCTCCAGACCGGCTCCCACCGCAGGA
CCATCGGGATGTGGTGATGCTGGACAGTGAGTGCTTTCTAACATGGTCGT
GAGGAGAGAGGGCTCATCCTCAGAGTCCCTGG
CAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCAGTGAGAGGTGATACG
TGCTCTTTCTCCCTTTAGTAGTTATGTTATAAGGAACTATTGTGGAAATA
TCTCTTCCTTCTCAATCAATGGAAGTTTATTATATGGGATGCCAGGCTTT
TACATGAGAGGGTACCATTGTTTGCAACGGTTGCCAGTAGAGAAGGAGTT
TTAAGCTTGTTAGATGAGAGAGAAACAGATGCTGTTAGAGCTGACTTCTG
GAACGGGCTCTCAGTGCTGCAGGTGCTGTGAATTTGAATCATAAAAATGT
TCAAAATTATATTTTGTTGACCCTCCCCGCCTAGTCAGATTGGGCAACAA
AATTGAATTTATGCTAAAAGCTTTTTTCATGAATATTTATTATAAATAAC
CTATTAATGAGAGCAAATAATAATAAAATACTAGAGAAATAACATGTTTA
AGGTAACCTAAATTTCTGGGCTTGGTTGCTCAACCTATAACCACATTTTG
ACGACTGAGGCAGGAGGATAGGCCACAAAGATCAAGGCCAGCCTGAATGA
CAGACACTGTCTCAAAATGAAACAAAAATATAACCCACGTTTTTCAAGTG
CCCCAGCCACTTATATTTTTATTTAGAAGACAAAGCCAGCTGGTGGTTGA
GAGCACCTCCTAGATGCTGAGCTGTCCTGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_j07.b1 MSMg01no163_j07.b1 CHROMAT_FILE:
MSMg01no163_j07.b1 PHD_FILE: MSMg01no163_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:12 2005
         (583 letters)



>mm_chr2_119609065_119610047
          Length = 983

 Score =  996 bits (515), Expect = 0.0
 Identities = 530/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 49  tacctgcctttgcctcccaagtgctgggatcaaaggtgtgcgccaccatgccccactctt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tacctgcctttgcctcccaagtgctgggatcaaaggtgtgcgccaccatgccccactctt 924

                                                                       
Query: 109 gtttgttttttgacacagggttttatgtacttcaggctggcttttaaacttaccatatag 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 gtttgttttttgacacagggttttatgtacttcaggctggcttttaaacttaccatatag 864

                                                                       
Query: 169 ccaagggtaacctggaactttctaccctcttgctttttaccccaagtgctgggggttata 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccaagggtaacctggaactttctaccctcttgctttttaccccaagtgctgggggttata 804

                                                                       
Query: 229 gacaggtgcagccgccctcgcgttggctgtaaataagtttactagactgatggccagaga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gacaggtgcagccgccctcgcgttggctgtaaataagtttactagactgatggccagaga 744

                                                                       
Query: 289 gggctgatagagaaagaaatgcctttgagctcacctccctgcatggaaaagataaagacc 348
           |||||||||||||||||||||||  ||||||||| ||  |||||||||||||||||||||
Sbjct: 743 gggctgatagagaaagaaatgccagtgagctcacatcaatgcatggaaaagataaagacc 684

                                                                       
Query: 349 accagggttcggttgtaaccgctgctgttttgatgctttaggggtggatgagagggagta 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accagggttcggttgtaaccgctgctgttttgatgctttaggggtggatgagagggagta 624

                                                                       
Query: 409 ctggaaggagtcgtacaaagggcacagctccagggccatgatgctgtccagaccgaagcc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctggaaggagtcgtacaaagggcacagctccagggccatgatgctgtccagaccgaagcc 564

                                                                       
Query: 469 tggagagtcagaggtggacctgctgcgcttccagagccagttccttgaggctggtgcagc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggagagtcagaggtggacctgctgcgcttccagagccagttccttgaggctggtgcagc 504

                                                                  
Query: 529 cccggcggtgcagctggtgaaggggagtaggaggcatggtgatgctcctccagac 583
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cccggcggtgcagctggtgaaggggagtaggaggcatggtgatgctcctccagac 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_j07.g1 MSMg01no163_j07.g1 CHROMAT_FILE:
MSMg01no163_j07.g1 PHD_FILE: MSMg01no163_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:12 2005
         (347 letters)



>mm_chr2_119426881_119427627
          Length = 747

 Score =  671 bits (347), Expect = 0.0
 Identities = 347/347 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagattgggcaacaaaattgaatttatgctaaaagcttttttcatgaatatttattataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagattgggcaacaaaattgaatttatgctaaaagcttttttcatgaatatttattataa 260

                                                                       
Query: 61  ataacctattaatgagagcaaataataataaaatactagagaaataacatgtttaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacctattaatgagagcaaataataataaaatactagagaaataacatgtttaaggta 320

                                                                       
Query: 121 acctaaatttctgggcttggttgctcaacctataaccacattttgacgactgaggcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctaaatttctgggcttggttgctcaacctataaccacattttgacgactgaggcagga 380

                                                                       
Query: 181 ggataggccacaaagatcaaggccagcctgaatgacagacactgtctcaaaatgaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggataggccacaaagatcaaggccagcctgaatgacagacactgtctcaaaatgaaacaa 440

                                                                       
Query: 241 aaatataacccacgtttttcaagtgccccagccacttatatttttatttagaagacaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatataacccacgtttttcaagtgccccagccacttatatttttatttagaagacaaag 500

                                                          
Query: 301 ccagctggtggttgagagcacctcctagatgctgagctgtcctgcac 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagctggtggttgagagcacctcctagatgctgagctgtcctgcac 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)