BAC Information

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BAC

Clone NameMSMg01-164H06
Chromosome2 (Build37)
Map Location 12,027,972 - 12,028,194
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247
Downstream geneItga8, 2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H06.T7 (MSMg01no164_h06.b1)MSMg01-164H06.TJ (MSMg01no164_h06.g1)
ACCAG362926AG362927
length728953
length of high quality
(start - end)
227 (52 - 278)95 (258 - 352)
definitionCHROMAT_FILE: MSMg01no164_h06.b1 PHD_FILE: MSMg01no164_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:18 2005CHROMAT_FILE: MSMg01no164_h06.g1 PHD_FILE: MSMg01no164_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCTTTATACCTTGATTCCTTTATTATAAGAACATTTG
ACACTGGAAGAAGGTTCCTTTGTGAAGTGAAACTTCTCTATACTTGGCCT
GTGGTGATGGTTGTTCAACGCTGAATAACTGTGCCCTTTACATGGGTACA
TTATAGTTAGGGGTGATGTTTGAAAAGGGTTTCAAATGTTTGCATGGTTC
CTAATAGTTCTACTCTCATGCAACCGATTGGTCTGATGTGTTTTAATTTG
TACCTCTGTACCTCTCTTCCCTTGCATCTTCAGCTAACTTCAAGGTTTTT
CTCTTCACCTGCCCTTTTTTTTTCTCCCCTNCCAACCGCCGCCATGATTA
ACTCTCAACCTGATTGTCTCCCCCCCCCCACAAAAAAAACAGCTTTTCAA
TTGTGTGTTTCCTACACTTATTCATGATGCCCCGCATATAGTACACGCTC
ATAAAATTGATGATCACCCGCACACTTACTTGTCTATTATTTTACCTCTT
AACGAACATGTACTTCCTGTGACCCCCTTCTATTACCCTCCATTATAGCT
CCCCTAATGCACGTCCTACTTTCCTTTTCTTAATCCCGTTGCTATTATCC
AGCTTTTCTTTCCCCACCTATTCATTCTGTCTTTCTATCTCCCTTTCCTT
GTCCTTTCCCTTTTCATTTCCTCCCCTC
TTCCTTTTTCCCAATTATANGGNNAAGCCCCGGGGGGCCCCCCCCGGCTC
TTCCAAAAAATAAGGGGGAACCATTAAAAAAAATTTTCCCGCCAAAAAAC
CCTCTGCCANCCCTAAAAAAAAAACCCCCCGGGGTTTCCTTTTTTAAAAA
ACCCCACACCCCCCCCCACAAAAAAAAACACTCCCCTAAAAAACAAACCC
TTTTCGGTTTTCCCCCCCCCCCAAAAAATCCTACAACACCTACCTTGTTT
GCTATATGCAGGAGAATCAAGTTGGAGGAAAAGGAAAGGAAAGACCTACT
ACAATACAGAATGCAATACAAAGAGCATCTGCCATTGAAGCTGCTGATGA
TGTTGANAATCCAAAAAATCCTAACTAAGTGTCTTTCACCCCTGAAAATC
CCTCATACCCCAAACTAATATCCCCCCATCACTATTGCCTCTTCTGCATT
GCCAAAAAACATATTCCTCATTGCACATTCAACTNCTATCCATCTATTAC
CCTTCCCTTTCACACTACAACCCCCCTCCTTTTCTACTCCTTCCTTCTCT
TCCCCCATTTTTTAACTTTTCTTTTTTCTTCCCCCACCCCTTTTTTTTCT
TCTCTCCCCTCCAATTGTGGGGGGTGGGGGGGGTGCACCNTCCTCCCCCC
CATTTNTTTTTCTTCTTTCCCATTTTATTTTTTCCCCCCCCACCCTTCTT
TTTTTTTATTGGGGGGGGGGTTCCCTACATNTTCCCNACACCTTATCTCC
CCNTCTTTTTCCCTCTTTTCCTTATCCGTTTGGGGTTGTTTTCCTCTTTC
CCTCCTCTCTTTTTCCCCTCCATCCTTCCTCTCCCTCCTTCTTTTTCCCT
CCATTTGTTTGGCGTTTCTGCTTTCCTTTATCCCTTCTTTTTCACCTTCA
ACTATATTACATTATCCCTTCACTCCATATCGCTTTATCTGATGTGTGTG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h06.b1 MSMg01no164_h06.b1 CHROMAT_FILE:
MSMg01no164_h06.b1 PHD_FILE: MSMg01no164_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:18 2005
         (227 letters)



>mm_chr2_12027768_12028394
          Length = 627

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatctttataccttgattcctttattataagaacatttgacactggaagaaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 427 gaattccatctttataccttgattcctttattataagaacatttgacactggaagaaagt 368

                                                                       
Query: 65  tcctttgtgaagtgaaacttctctatacttggcctgtggtgatggttgttcaacgctgaa 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 367 tcctttgtgaagtgaaacttctctatacttggcctgtgctgatggttgttcaacgctgaa 308

                                                                       
Query: 125 taactgtgccctttacatgggtacattatagttaggggtgatgtttgaaaagggtttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taactgtgccctttacatgggtacattatagttaggggtgatgtttgaaaagggtttcaa 248

                                                      
Query: 185 atgtttgcatggttcctaatagttctactctcatgcaaccgat 227
           |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 247 atgtttgcgtggttcctaatagttctacactcatgcaaccgat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)