BAC Information

Click to search

BAC

Clone NameMSMg01-164J11
Chromosome2 (Build37)
Map Location 32,073,822 - 32,231,932
singlet/doubletdoublet
Overlap gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1
Upstream geneFreq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3
Downstream gene1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164J11.T7 (MSMg01no164_j11.b1)MSMg01-164J11.TJ (MSMg01no164_j11.g1)
ACCAG363021AG363022
length767724
length of high quality
(start - end)
252 (52 - 303)280 (80 - 359)
definitionCHROMAT_FILE: MSMg01no164_j11.b1 PHD_FILE: MSMg01no164_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:29 2005CHROMAT_FILE: MSMg01no164_j11.g1 PHD_FILE: MSMg01no164_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,073,822 - 32,074,068)(32,231,656 - 32,231,932)
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATTGAGGCCAACCAGAGTATGGCTGAGTGTGCTGGCAC
AGGCCTTTCACCTCAGCACTCAGGAGGCACAGACAGGAGGATCATGGGAG
TTCCAGGTCAGCCAGAGCTACATAAGATCCTGTCTGAGGAGGCTGGCTGT
TGGAAGAAGCTCTCAGATTAGTGCCTGTATGTCAGATTTAGTCACAAATC
TCGGTCTTTGGAGCTCTGTGCCCTACAAGGCGGGGGTGGGATGGGGTGGG
GTGGTCCACCCCCCTTTCCCTCTTTTTTTTTTTTTCTTCCTTCTTCCCCC
CTCCACCTCTCCTTTTTTGTTTTTTCCNNNCCCTTNCCCCNTTTTTTTTT
TTTGCTCCCTTTTTTTTTTTTTTTCCCCCCCCAAAAAAAAAAAAAATTCC
TGGCGGGGGGGGGGTTTTCCTCCCTTTTTTCCCCCCCCTTTTTATCCCTT
TTTTCCTCCTTTTTCTTTTTTCCCTTTCCCCTCCCTTTTCCCTTTTCCTT
TTCCCCCCTTTTTTCCCCCTCCTTCTCCCTCCTCTTTTTCTCCCCTATTT
CCCCCCTTTTTTTTTCCTTCCCCCCCTTCTATCCCCCCCTCCTCTCCTCT
CCACTTCCTTCTTTCCCCCCCCCCTTTTTTCTCCTTTTCTCCCCTTCTTT
TTCTCCTCTTTCTCTCCTTTCTTCCCTCCTCCTCTTTCCTCCCTTTCTTT
TTTTCCCCCCCTTTTTT
NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCAGCCTCAATCTCTTC
TTCTTCTTCTTCTTCCTCGTCGTCATCCTCGTCCTCTTCTTGACCACTCT
CAAAGCAACCGACGGCGTCCACAGTGATGAAGTGGTCCTCATCTGGGCTG
CCTGTCTCCTTTTCAAGTGTCTTCAGCTGCCCGAGGAATGCGTGAGGAGC
TTAGGCCAGCTGTGGGCAGCTAGCGTACACCCCTGAGGGCTCTACCCCCC
ACCCCCACCCCCAGCTGCTCTATGATCTCAGCGGGAGGCTTCATGCTGAA
CTGAGGCAGCTAGTTTTTTTTCTTGCCCCCCCCCCCCCTGTGTCCCTGGG
ACTTCACGTGCTCCACAAACTTTCCCACCCCACAAAGAAATAACGGTTGC
CTATGGTGCAGAAGGGCCTCATGGATTGTTTGGCAACCTGGGGAAAGGCA
GGTAGGCCAGGTGGTGCACCTGTAGCACCCCTAGATACAAGCCACCCTCT
CAGTGGCTCAACGAGACCACCACCTCACCTCTCAAACCCACAGGCCCAGC
TCTGCTCCGCCCCTGCACTGTGACATGCTAACCCACTTCTCTTCACTATG
TGGTATGGCGGTTGGCCACAGAGATAGAATACTATGGCGACAGTCGTCAA
AGACTCCCCCATGTACGATGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_j11.b1 MSMg01no164_j11.b1 CHROMAT_FILE:
MSMg01no164_j11.b1 PHD_FILE: MSMg01no164_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:29 2005
         (252 letters)



>mm_chr2_32073618_32074269
          Length = 652

 Score =  400 bits (207), Expect = e-116
 Identities = 237/247 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattgaggccaaccagagtatggctgagtgtgctggcacaggcctttcacctca 64
           |||||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||||||
Sbjct: 205 gaattctattgaggccaaccagagtatgactcagtgttctggcactggcctctcacctca 264

                                                                       
Query: 65  gcactcaggaggcacagacaggaggatcatgggagttccaggtcagccagagctacataa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcactcaggaggcagagacaggaggatcatgggagttccaggtcagccagagctacataa 324

                                                                       
Query: 125 gatcctgtctgaggaggctggctgttggaagaagctctcagattagtgcctgtatgtcag 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gatcctgtctgaggaggctggctgttggaagaagctctcacattagtgcctgtatgtcag 384

                                                                       
Query: 185 atttagtcacaaatctcggtctttggagctctgtgccctacaaggcgggggtgggatggg 244
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 385 atttagtcacaaatctcggtcttcggagctctgtgccctacaaggcggggttggggtggg 444

                  
Query: 245 gtggggt 251
           |||||||
Sbjct: 445 gtggggt 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no164_j11.g1 MSMg01no164_j11.g1 CHROMAT_FILE:
MSMg01no164_j11.g1 PHD_FILE: MSMg01no164_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:29 2005
         (280 letters)



>mm_chr2_32231394_32232073
          Length = 680

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctcagcctcaatctcttcttcttcttcttcttcctcgtcgtcatcctcgtcctcttc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctcctcagcctcaatctctccttcttcttcttcttcctcgtcgtcatcctcgtcctcttc 480

                                                                       
Query: 61  ttgaccactctcaaagcaaccgacggcgtccacagtgatgaagtggtcctcatctgggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttgaccactctcaaagcaaccgacggcgtccacagtgatgaagtggtcctcatctgggct 420

                                                                       
Query: 121 gcctgtctccttttcaagtgtcttcagctgcccgaggaatgcgtgaggagcttaggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcctgtctccttttcaagtgtcttcagctgcccgaggaatgcgtgaggagcttaggccag 360

                                                                       
Query: 181 ctgtgggcagctagcgtacacccctgagggctctaccccccacccccacccccagctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgtgggcagctagcgtacacccctgagggctctaccccccacccccacccccagctgct 300

                                                
Query: 241 ctatgatctcagcgggaggcttcatgctgaactgagg 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctatgatctcagcgggaggcttcatgctgaactgagg 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)