BAC Information

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BAC

Clone NameMSMg01-164N18
Chromosome2 (Build37)
Map Location 113,859,540 - 113,860,197
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr3, 4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik
Downstream geneActc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N18.T7 (MSMg01no164_n18.b1)MSMg01-164N18.TJ (MSMg01no164_n18.g1)
ACCAG363199AG363200
length738738
length of high quality
(start - end)
320 (45 - 364)660 (73 - 732)
definitionCHROMAT_FILE: MSMg01no164_n18.b1 PHD_FILE: MSMg01no164_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:49 2005CHROMAT_FILE: MSMg01no164_n18.g1 PHD_FILE: MSMg01no164_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTTAGATTTGTACCCAGATTTTTAATTGGATTATTTGGTTTGTT
GACATCTAGTTTCTAGGTTTCTTTATATATTTTGTATGTCAGCCCTCTTT
CAGATGTGGTGTTGGTAGAAATCTTTCCCCATCTTGTCCTTTTGATGTTG
TCCTTTGCCTCATAGAAGCTTTTCAGTTTCATGAGATTACATTTATTAAT
GGTTGATCTTAGTGCCTGAGCTGTTGGTGTTCTGTTTAGGAACTTATCTC
CTATGTTATTGTATTCAAAGCTATTTCCCACTTTCTCTCCTATCAGATTT
AGTGTTTCCAGTTTTTGGTTTTCCCCCCCCCCCCATTTATTTATTATATG
TAAGTACACTGTAGTCCCCCCCAAATACAACAAAAAAGGGCATCAGATCT
CATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCG
GACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCA
GCCCTAGCGTTTCCAGTTTTATGTTAAGGTCTTTGATTCACTTGGACTTG
AGTTTTGTGCAGGGTGTTAAAGATGGGTCTATTTGCATTCCTCATTCTTT
TTTTCCATTGTATAGTTTTGGCTTCTTTCTCACAAATCAAGTTCCATGTG
TGCGTAGGTTTACCTCTTGTTCTGAGAAGGCTAGGCTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGAAGAGAGTATGTCTTCAGGAGGCA
ATAGTAGGCTGAGATAATTAACCACCCCTCTGACCATGAGGCCTATGAAC
CCTGCCTAGGGGGCACTCACTACCATGACTTCAGCCTTGTTGCCTAAGGA
TCAAGCGGAACCCCGTGCAGCTCTCCCAAGTAACAACCTCCCCACAAGAA
ACTATCCCTGACTACAACCACCACATCATGGACTTTCCACGAATTTCTGA
GGGCTTGCACCTGTACTCAGAGACTGCATCTATCTCTAGCTGAGCTAGGA
CCACTTTTGTTACATCGTTGACACATCAACACAGAGTGACCCTAAGACTG
AACTCCAAGAACCATTCACCCGATCCAAAGCCTGACGAACTGTGCTAAGA
GCAACTCGGTATCCAAGGGTCTACTCAACAAAAGTGGGATACATATCCAT
TTCAGAATCACTACCTGACCCCAGATGTCTCACTTCCATTACAAAAACAC
AAACAACACAAATAACCAAGAGAGTGTGTCTCCTCCAGGAATCAGCAGCC
TCATAGCCATGTTCCTCAAGAAAAAGAACTTAGATGACATATGAAACAAT
TATTTCAAAATAGCCATTATAAATATATATGAGTTACCCGGATAGGATAT
GAATAAATCCTGGAACATAGACCATGAAAACACAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n18.g1 MSMg01no164_n18.g1 CHROMAT_FILE:
MSMg01no164_n18.g1 PHD_FILE: MSMg01no164_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:49 2005
         (660 letters)



>mm_chr2_113859340_113860397
          Length = 1058

 Score = 1145 bits (592), Expect = 0.0
 Identities = 643/660 (97%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaagagagtatgtcttcaggaggcaatagtaggctgagataattaaccacccctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||  | |||||||
Sbjct: 201 agtgaagagagtatgtcttcaggaggcaatagtaggctgagataactaa-gaaccctctg 259

                                                                       
Query: 61  accatgaggcctatgaaccctgcctagggggcactcactaccatgacttcagccttgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 accatgaggcctatgaaccctgcctagggggcactcactaccatgacttcagccttgttg 319

                                                                       
Query: 121 cctaaggatcaagcggaaccccgtgcagctctcccaagtaacaacctccccacaagaaac 180
           ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct: 320 cctaaggatcaagtggaaccctgtgcagttctcccaagtaacaacctccccacaagaagc 379

                                                                       
Query: 181 tatccctgactacaaccaccacatcatggactttccacgaatttctgagggcttgcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatccctgactacaaccaccacatcatggactttccacgaatttctgagggcttgcacct 439

                                                                       
Query: 241 gtactcagagactgcatctatctctagctgagctaggaccacttttgttacatcgttgac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtactcagaggctgcatctatctctagctgagctaggaccacttttgttacatcgttgac 499

                                                                       
Query: 301 acatcaacacagagtgaccctaagactgaactccaagaaccattcacccgatccaaagcc 360
           ||||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||
Sbjct: 500 acatcaacacagagtgaccctaagattgaactcc-agaaccattcatctgatccaaagcc 558

                                                                       
Query: 361 tgacgaactgtgctaagagcaactcggtatccaagggtctactcaacaaaagtgggatac 420
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 559 tgacaaactgtgctaagagcaactcagtatccaagggtctactcaacaaaagtgggatac 618

                                                                       
Query: 421 atatccatttcagaatcactacctgaccccagatgtctcacttccattacaaaaacacaa 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 atatccatttcagaatcactacctgaccccagatgtctcgcttccattacaaaaacacaa 678

                                                                       
Query: 481 acaacacaaataaccaagagagtgtgtctcctccaggaatcagcagcctcatagccatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acaacacaaataaccaagagagtgtgtctcctccaggaatcagcagcctcatagccatgt 738

                                                                       
Query: 541 tcctcaagaaaaagaacttagatgacatatgaaacaattatttcaaaatagccattataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcctcaagaaaaagaacttagatgacatatgaaacaattatttcaaaatagccattataa 798

                                                                       
Query: 601 atatatatgagttacccggataggatatgaataaatcctggaacatagaccatgaaaaca 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 799 atatatatgagttacccggataggatatgaataaatcctggaacaaagaccatgaaaaca 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1058
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1048
Effective search space:   681200
Effective search space used:   681200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)