BAC Information

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BAC

Clone NameMSMg01-164P13
Chromosome2 (Build37)
Map Location 158,879,050 - 158,879,277
singlet/doubletsinglet
Overlap genenone
Upstream gene2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P13.T7 (MSMg01no164_p13.b1)MSMg01-164P13.TJ (MSMg01no164_p13.g1)
ACCAG363271AG363272
length702729
length of high quality
(start - end)
316 (54 - 369)222 (85 - 306)
definitionCHROMAT_FILE: MSMg01no164_p13.b1 PHD_FILE: MSMg01no164_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005CHROMAT_FILE: MSMg01no164_p13.g1 PHD_FILE: MSMg01no164_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGATCAGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGAAAGTCCACCTTCTTGACCTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTG
GAGTTTCATGAGATCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTCTCCCCTGTGCCCATATCTTCAAGGCTT
TTCCCCACTTTCTCTTCTATTTGTTTCACCGCCCCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCCCACAACAAAGAGATAGGTATGGAT
CGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACGGGATC
CTAAGATCTCTGGTGAGTGGAACACAGCGTCTACCCCAATCAAATCTCAC
GGATCCTGAGACTGCATTAACTAGGGAAGCAGAAGACCCGGGCCTGACCT
GGGGCACAAGTCCCTTCCCGTCCACTCGAGCACCGGGGTGCCTCGCCAGC
GGAGTCTCCCAACACCAGTAAGGGCCCACACAGGATTCCACATGGGATCC
TA
CTTCCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGAGCCTGGACCG
TGCAAACCAGAGGCTGTTTCCAGGTAGGTTCTCCATTACCTCAGCATGGG
TGGGAGAGGAGGTGTTTTTCCTTCTTGCTTTGCTATCCTCAGAGTCAGAA
CAAAGACTAGACCCCCCAAAAGCCAGGGCCTCTAATCTCTCAGAAAAAAA
AAAAAAAACTTTGAGAGGAGAGGAAGGTCGCTGATCTGCCATAGAGAGCT
GGCAAGCTGGGTGCCCGGAGGCCAGGTTTTTTTATTCCGTGAGTGACGTG
TAGAGCAGAGTCTGTTTTTCGTGTTTTCCCGGGCTGGCCCCCAGTTTCCT
GGAACTTCTATCCTGTCTCTGTCCCCCCCCCCAAAATAAAAATTATCCAG
GAGGGCCTTGGTTCTGACCGGTTATTTTTGGGGCTACCTCATATTAGCCT
GGACGCCTGTTGCCTCTTGCCCTTTTCTTACCTCTTGTTCCTCTGATCCC
ACTGTCCTTCTAGTCTCCCTCCTTCCATTCCCCCCGGGTTCCCCCTTTCT
CCCCATTATCGTCGCCTTTTTTCCCTTGTTTTCTTCTGTCTTTTGCTTGC
GCCTCCCTTTTACATTCTTTTCCTACCCTCTTTCCCCTTGCTTTATCCTT
GTGCTTCCCTTCCCTTTTCCCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p13.g1 MSMg01no164_p13.g1 CHROMAT_FILE:
MSMg01no164_p13.g1 PHD_FILE: MSMg01no164_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:57 2005
         (222 letters)



>mm_chr2_158878850_158879477
          Length = 628

 Score =  406 bits (210), Expect = e-118
 Identities = 221/228 (96%), Gaps = 6/228 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagagcctggaccgtgcaaaccagaggctgtttccaggtaggttctccattacctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagagcctggaccgtgcaaaccagaggctgtttccaggtaggttctccattacctcag 260

                                                                       
Query: 61  catgggtgggagaggaggtgtttttccttcttgctttgctatcctcagagtcagaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgggtgggagaggaggtgtttttccttcttgctttgctatcctcagagtcagaacaaa 320

                                                                       
Query: 121 gactagaccccccaaaagccagggcctctaatctctcagaaaaaaaaaaaaaa------a 174
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 321 gactaggccccccaaaagccagggcctctaatctctcagaaaaaaaaaaaaaacaaaaaa 380

                                                           
Query: 175 ctttgagaggagaggaaggtcgctgatctgccatagagagctggcaag 222
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgagaggagaggaaggtcgctgatctgccatagagagctggcaag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 628
Length adjustment: 9
Effective length of query: 213
Effective length of database: 619
Effective search space:   131847
Effective search space used:   131847
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)