BAC Information

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BAC

Clone NameMSMg01-166N18
Chromosome2 (Build37)
Map Location 112,878,445 - 113,053,593
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166N18.T7 (MSMg01no166_n18.b1)MSMg01-166N18.TJ (MSMg01no166_n18.g1)
ACCAG364553AG364554
length751759
length of high quality
(start - end)		372 (45 - 416)498 (75 - 572)
definitionCHROMAT_FILE: MSMg01no166_n18.b1 PHD_FILE: MSMg01no166_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:29 2005CHROMAT_FILE: MSMg01no166_n18.g1 PHD_FILE: MSMg01no166_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,053,230 - 113,053,593)(112,878,445 - 112,878,939)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGC
GGAATTCTACCAGTGATCTGAGTTCTGCCCTTCTGGAACTCATAGCTCCT
GGCTGGAGTGCTGGTGAACTTTTACCTGGTGGCTACGGATGCTAGCTTGC
TTCTCTTGTAGGCAGTGTGGATTTATTTTCCAGCTCTTGAAGTAGATACT
TTTGCTCAGGATGCCAAGTGGGAAAGATGTGAAAAACATCCTCCTGGAGC
TGCAGAGAGCATAATGCAGGCAGAGCTAGAAGGCAGACCCCAGATACCCA
GGTGTGGACCTCTGCAGGGCCGACCGGGAGCTCTACTGCCAAATGAGTGT
GAATGCTAATGCCGGCCTTCCAAGGTCTCTACAGGGCCTCTCAACTACAC
AGTCTCTTCCTTGACCACCCCCCACAGTTGATTTGATTCGGTACCAGTGT
AGTAATGCACATAATATTCTCTTCTTCCCAGCGAAATGCCCCTGGTGCGT
GTGAATAGGAAGTAAGGCCCTTTCTTCCAAGTAATCAAGTTGAGCTGGGA
AAACTGCTTCTGCATTAGGGTGTTGTGGCTTCTAACTGCTGTGGACCATG
GCTGATCACAGGCTTTATCTGCTGAATTCACCATCACACCTGATTTTTTG
CCCGCACTCTTGCCATACTTTTCCCCGTTTTGAGTTCCCCGATGCTCACT
TTTCCCCTTTATCACCCCCTCCCTTTTTTCTTGCCCCTCTTTTTTCCCCC
G

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACAGCAAGTCACAACATAGACTGTG
TAACCTCAGAGGTAGCAAAGGCCAATGGCATACAGCCATGGTACACACAC
ATACACACAAAGCCCCTGGATCTAACATTTCCTGAATGTCATTCTTTAAA
AAGGTATGACTAGGGCACTTTAACTTTATAGGTTCACACCATAAGTGTGT
GTCTCTACTTTCGTTCTTGGTAAGCACTGTGACTTTGCAGGAAGGAAAGC
ATCTAATTCTGACTATACTTTGTCACTAGTCAGGGACACTGATAGGTTGT
GTAAGGACAGGTGCTTTTGTGTGCTATTAGAGCTATTTATTTCATTGGTT
TCCTTTACTGTCACCACCGGCTCCTCATTTGAAGCACGGTGTCTTTCTTG
GGCATACTGGCTTTTTCATACTACCCACCCACTTTCTATGAAATCTTCTG
ACAATGTTTATGCTACGTATAGGGAATGGGCTGTTGCGTATCCTGTTTTA
CTTCTGGGAAATAATACAGCTTCTGGTATTTTTCTGTCTATGCTGCTTTT
GAGTATCTGCTGATACTTTTCTGTTACTGTTTGAAACAAATAGCTCTACA
AAACCCAACTCCCCACTGTGCGTTTAACTCCTATTATTGCGTGCAATACT
ATCCATAATTCTAGCTTAATTAAACTACTAAAATACATTAAACCATATTT
TATCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_n18.b1 MSMg01no166_n18.b1 CHROMAT_FILE:
MSMg01no166_n18.b1 PHD_FILE: MSMg01no166_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:29 2005
         (372 letters)



>mm_chr2_113053023_113053794
          Length = 772

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctaccagtgatctgagttctgcccttctggaactcatagctcctggctggagtgc 67
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattctaccagtgatgtgagttctgcccttctggaactcatagctcctggctggagtgc 512

                                                                       
Query: 68  tggtgaacttttacctggtggctacggatgctagcttgcttctcttgtaggcagtgtgga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tggtgaacttttacctggtggctacggatgctagcttgcttctcttgtaggcagtgtgga 452

                                                                       
Query: 128 tttattttccagctcttgaagtagatacttttgctcaggatgccaagtgggaaagatgtg 187
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttatttcccagctcttgaagtagatacttttgctcaggatgccaagtgggaaagatgtg 392

                                                                       
Query: 188 aaaaacatcctcctggagctgcagagagcataatgcaggcagagctagaaggcagacccc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaaacatcctcctggagctgcagagagcataatgcaggcagagctagaaggcagacccc 332

                                                                       
Query: 248 agatacccaggtgtggacctctgcagggccgaccgggagctctactgccaaatgagtgtg 307
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agatacccaggtgtggacatctgcagggccgaccgggagctctactgccaaatgagtgtg 272

                                                                       
Query: 308 aatgctaatgccggccttccaaggtctctacagggcctctcaactacacagtctcttcct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatgctaatgccggccttccaaggtctctacagggcctctcaactacacagtctcttcct 212

               
Query: 368 tgac 371
           ||||
Sbjct: 211 tgac 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_n18.g1 MSMg01no166_n18.g1 CHROMAT_FILE:
MSMg01no166_n18.g1 PHD_FILE: MSMg01no166_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:29 2005
         (498 letters)



>mm_chr2_112878245_112879142
          Length = 898

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcaagtcacaacatagactgtgtaacctcagaggtagcaaaggccaatggcataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcaagtcacaacatagactgtgtaacctcagaggtagcaaaggccaatggcataca 260

                                                                       
Query: 61  gccatggtacacacacatacacacaaagcccctggatctaacatttcctgaatgtcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatggtacacacacatacacacaaagcccctggatctaacatttcctgaatgtcattc 320

                                                                       
Query: 121 tttaaaaaggtatgactagggcactttaactttataggttcacaccataagtgtgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaaggtatgactagggcactttaactttataggttcacaccataagtgtgtgtct 380

                                                                       
Query: 181 ctactttcgttcttggtaagcactgtgactttgcaggaaggaaagcatctaattctgact 240
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ctactttggttcttggtaagcactgtgactttgcaggaaggaaagcatctaattctaact 440

                                                                       
Query: 241 atactttgtcactagtcagggacactgataggttgtgtaaggacaggtgcttttgtgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactttgtcactagtcagggacactgataggttgtgtaaggacaggtgcttttgtgtgc 500

                                                                       
Query: 301 tattagagctatttatttcattggtttcctttactgtcaccaccggctcctcatttgaag 360
           |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 501 tattagagctgtttatttcattggtttcctttactgtcatcactggctcctcatttgaag 560

                                                                       
Query: 361 cacggtgtctttcttgggcatactggctttttcatactacccacccactttctatgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacggtgtctttcttgggcatactggctttttcatactacccacccactttctatgaaat 620

                                                                       
Query: 421 cttctgacaatgtttatgctacgtatagggaatgggctgttgcgtatcctgttttacttc 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 cttctgacaatgtttatgctacgtatagggaatgggctgttgtgtatcctgttttacttc 680

                          
Query: 481 tgggaaataatacag 495
           |||||||||||||||
Sbjct: 681 tgggaaataatacag 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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