BAC Information

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BAC

Clone NameMSMg01-167O08
Chromosome2 (Build37)
Map Location 102,869,619 - 102,870,132
singlet/doubletsinglet
Overlap genePdhx
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
Downstream geneApip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167O08.T7 (MSMg01no167_o08.b1)MSMg01-167O08.TJ (MSMg01no167_o08.g1)
ACCAG365245AG365246
length857747
length of high quality
(start - end)
100 (45 - 144)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no167_o08.b1 PHD_FILE: MSMg01no167_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:47 2005CHROMAT_FILE: MSMg01no167_o08.g1 PHD_FILE: MSMg01no167_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTGTTTCACGTGGCCTGCCAGACTAGCTTAACTAGTAATCTGCA
GATCCCAGTAAAATACCCTGCCTTTAAAAGACAGGAGGAGGACGTTTTTG
TTTATGTTTTTTTTTTTTTTTTTTTTTTTTTCNTTTTTTTTTTTTTTTTC
NTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGATTTTTTTTTGTTTTGTTT
TGTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTCCTTTTTTTTTTTTT
TTTTTCTTCTTTTTTTTCTTTTTTTTTTTCCGATTCTTTTTTTTTTTTTT
CCTTCTTTTTTTTTTTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTCCCTT
TTTTTCTTTTTTTTCTTCTTTTTTCCCCACCCCTTTTTTTCTTTTTTTTT
TTCTCTCTCTTTTTTTTTCTTTTCTCCTTTTTCTTTCTTTTTTCTCCTCC
CTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTCTCTTCTTTTTTTTTTT
TTTTTTCTCCCTTTTTTTTTTTTTTTTTCTTTTTTTTTTTACCTCCTTTC
TTTTTTTTTTCTTTTTTCTTTTTTTCTTTTTTTCCTTTTTTTTTTTTTTT
TCTCTTTTTCTTTTTTTCTTTCTTCTTTTTTTTTTTTTTCTTTCTCTTTC
TCTTTCTTTTTTTTCTTTCCCTTCTTTTTTGTTTTTTTTCTCTTTCTTTT
TTTTCTTTTTTTTTTTTTTCTCTTTTCTCCTTCTCTGCTTTATTTTCTTT
TCTCTTTTCCATTTTTTTTCTTCTTTTCTTTCCCTTTTCTCTCTCTTTTG
TTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTCTCTTCTCTTTATCTTTAT
CCATCCACACTTTAAGTAATTAATAGAGGTTTGCAGTTTCCTAGTAAAAT
AACTGGATCTAGTTGATTTTGGTGCTTTCTCCTTTACTTTGTAGATATTG
CTTTGTGCCTGAATTTGCAGTCTTCTCTTCATTTTTAAAACATCTAGCTC
CCAGAAAGTTGCTCCTCTCATGCAGTTTCCCAATTATCTAAGCCCAGAGC
CTCTGGCTGCTGTGGTTGTCCATGTTGATGTTGCCTGAGATGCTCTAAGC
GCCACCTTGCTTGTATCGTTGCCAGCTTGTTTTCCCCACTCAGCTATTAT
ATGTTTCTTCCTTTCCTTAGGTCTGCGTGGTTAGAAAACTTGAGTGTGGA
ATTCATTTTAATAATTCCTTAAAAGGGTTAAGAGTTTGAATATTGTTTTG
AATCCAACTTAGATCATTTTCCGTGGGTCTTCATTATGTATTCATTGATT
AAATGTCATTCCAAAATAGTCTTCCTTGTTGGGGGTTTGGCGTGCTTTAT
CTCTGGTCTTTGTTCCCCCCCCCCTTTTGCCCCCCCCCCTCTTGTTTTTT
TTTTATCCCCCCCCCCCTCTCTTCTTTTTCCCCTCATTTTTTTTCCCCTA
CCTCTTTTCCCACTTTTCTTTCTTTATTTTTCCCCCCTCTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_o08.g1 MSMg01no167_o08.g1 CHROMAT_FILE:
MSMg01no167_o08.g1 PHD_FILE: MSMg01no167_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:47 2005
         (514 letters)



>mm_chr2_102869419_102870332
          Length = 914

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctctcttctctttatctttatccatccacactttaagtaattaatagaggtttgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tggctctcttctctttatctttatccatccacactttaagtaattaatagaggtttgcag 655

                                                                       
Query: 61  tttcctagtaaaataactggatctagttgattttggtgctttctcctttactttgtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tttcctagtaaaataactggatctagttgattttggtgctttctcctttactttgtagat 595

                                                                       
Query: 121 attgctttgtgcctgaatttgcagtcttctcttcatttttaaaacatctagctcccagaa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actgctttgtgcctgaatttgcagtcttctcttcatttttaaaacatctagctcccagaa 535

                                                                       
Query: 181 agttgctcctctcatgcagtttcccaattatctaagcccagagcctctggctgctgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agttgctcctctcatgcagtttcccaattatctaagcccagagcctctggctgctgtggt 475

                                                                       
Query: 241 tgtccatgttgatgttgcctgagatgctctaagcgccaccttgcttgtatcgttgccagc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 474 tgtccatgttgatgttgcctgagatgctctaagcgccaccttgcttgtatcgttaccagc 415

                                                                       
Query: 301 ttgttttccccactcagctattatatgtttcttcctttccttaggtctgcgtggttagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgttttccccactcagctattatatgtttcttcctttccttaggtctgcgtggttagaa 355

                                                                       
Query: 361 aacttgagtgtggaattcattttaataattccttaaaagggttaagagtttgaatattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aacttgagtgtggaattcattttaataattccttaaaagggttaagagtttgaatattgt 295

                                                                       
Query: 421 tttgaatccaacttagatcattttccgtgggtcttcattatgtattcattgattaaatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tttgaatccaacttagatcattttccgtgggtcttcattatgtattcattgattaaatgt 235

                                             
Query: 481 cattccaaaatagtcttccttgttgggggtttgg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cattccaaaatagtcttccttgttgggggtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)