BAC Information

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BAC

Clone NameMSMg01-168C02
Chromosome2 (Build37)
Map Location 143,073,827 - 143,074,223
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168C02.T7 (MSMg01no168_c02.b1)MSMg01-168C02.TJ (MSMg01no168_c02.g1)
ACCAG365413AG365414
length1,1441,187
length of high quality
(start - end)
405 (44 - 448)330 (134 - 463)
definitionCHROMAT_FILE: MSMg01no168_c02.b1 PHD_FILE: MSMg01no168_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:08 2005CHROMAT_FILE: MSMg01no168_c02.g1 PHD_FILE: MSMg01no168_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCGCATTCGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCTGGATTTCTCAGACATTTATCATGCAAATGTCCGAATGGATATT
TCCAAACTAAGAGATCATACATTTCTTTCTTTCTGAGCTTTTTTGTTTCC
TTAGGTGAGACTGTGAACAGATAATGTTTCCTTTTACTTTCCACCACTCT
GTGTTATTCAGTATGACAGTAGGTATGAGAGTTCAGACATCTATGAGCTA
CCATTGTGAGCTAAGTGAGCCTTTCTATTCTCAGAGGGATAAAGTTGGAA
ATGGTCCCCCTTGTACGGTGTGTATATGTCTCTGCTTTCTTTTTTTTCCA
TTTAACAAAAATTTTACTGGGTATTTATTTCATTTACATTTCCTATTTTA
TCCCAAAAGTTCCCACACGCTCCCCCACCCACGCACACCCACTTTTTTTT
TCCCCCCCCCCCCTGAANTGAGGCCCCTCCAAAAAAAAAGAGGAGTGGGC
CTCACTTTCCACTGATGGCCGACTAGGCCATTTTCTGATTCATATGCAGC
TACAGACACGAGCTTCAGGGGGGTACGGGTTATTTCATATTGTTGTTCCA
CCTATAGGATTGCAGATCCCTTTAGCTCCATGAGTCCTTTCTCTAGCTCC
ACCATTGGGGTCCCTGTGTTCCATCCATTAGCTGACTTCTGTGTTTGTTA
GACCCTGGCATACTCTCTCAAGAGACAGTTCTATCTGTGTCCTTTCAACA
AAATCTTGCTTATGTTTGCCATGGTGTTCACTCTTGATATTCTGATTATG
CTATGTTTTCCCCGCATCTGTCATTTCTCTAAATACATTCATTCTTTTTC
TTTCAACTTCTATCTTTTGCTTCCTTTTCATCTTTCTATTTCTTATTTTC
TTCTCACTTTCCTTTCCTATTTTCCTTTCCTTCTACTATCTCTTCCTCTT
TTTTCTTATTTTTTTCCTATCTTTTTTTATTTTCCTTTTATCTCTTCTTC
TTATTTAATTTTTTTCTCTCTCTTCCTTTTACTTCTCTCTCTCCCTTTTT
CTTCTATTTTTCTTTTTCTTCATCTATCCTCCTTTCTTTATCTTTTCTTT
CTATTTCTCTCTTTCTACTTTTTTTATTTTATATCTTTCTCTTT
NNCCCGACCTNNNNNNNAACGACGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAATAGCGCCACATGCATG
ANAAAACAAAATACCCATGACATGAGATACCGAGACAAAGTTTGGAGCTG
GGACGAAAGGATGGACTATCCAGAGACTACCCCACCCAGGGATCCATCCC
ATAATCAGCCACCAAACCCAGACACTATTGCATATGCCAGAAAGATTTTG
CTGAAGGAACCCTGTTAGAACTGTCTCATATGAGGTTATACCAGTGCCTG
GCAAATACAGAAGTGGATGCTCACAGTCATCTATAAGAAGGGCCCCCAAT
GGAGAAGCTAGAGAAAGCACCCAAGGAACTGAAGGAATCTGCAAACCTAT
GGGTGGAACTTTTTTATGAACTAACCAGTACTCCCAGAGCCCATATCTCT
AGCTGCATATGTTTTTTATGCCCCCCCAGTCAGCCATCACTGGGAAGAGA
GAACCCTTGGTATTGCAAACTTTATATGCCCCAGCACAGGGGAATGCCAG
GGCTAGAAGCGGGAGTGGGTGGGTAGGGGAGCAGGGCAGAGGGAGGGTAT
AGGGAACTTTCGGGATAGCATTTGAAATGTTATAAAGAAAATATCTAATA
AAAGAGTTGTAGAAAAAAAAACCAGGCCACACATGTGTTAGACAAGACAT
TTGATTTTTATTTTTTGAGTTGAAAGGGCTTATGAGAGATAATGCATGTG
AAAGATTAGCCTAGGCCAGGGGACCACATTTGTGCCTTCTTGTAAATTCC
CAGAGAACTCTAGGGTTTGTGAACTTTGCTGGCATGTCCTAAGCTCAGGT
TAAGGTAATTGTGCACACCTTTTTTTGGTCTAAGACACTGAAATTGTTTT
CAAGGGTTTATTATTCGCTCCTGTTACCCTTTTTGTCCGTCTTGTGTTCT
CATCATACGTCACTCTTTTCTTTTTACTCTACTCTCACTATTCTTTCTTC
CTCTTTCCTTCTTTTCTATCCTTCTTTTACACTTCTTTCCTTTCCCTCTT
ACTAATTGTCTACTTTCTTTTCCTCCTTCTTGTATTAATCACCTTATTTC
TCTCTCCTTCTCATCTCTCTTATCTATCTTCTGCTTCTCTTCCCACTTAC
TCCTCTCTCCTTGTCTATCTTTATTCATCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_c02.b1 MSMg01no168_c02.b1 CHROMAT_FILE:
MSMg01no168_c02.b1 PHD_FILE: MSMg01no168_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:08 2005
         (405 letters)



>mm_chr2_143073623_143074427
          Length = 805

 Score =  729 bits (377), Expect = 0.0
 Identities = 392/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctggatttctcagacatttatcatgcaaatgtccgaatggatatttccaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctggatttctcagacatttatcatgcaaatgtccgaatggatatttccaaac 264

                                                                       
Query: 65  taagagatcatacatttctttctttctgagcttttttgtttccttaggtgagactgtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagagatcatacatttctttctttctgagcttttttgtttccttaggtgagactgtgaa 324

                                                                       
Query: 125 cagataatgtttccttttactttccaccactctgtgttattcagtatgacagtaggtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagataatgtttccttttactttccaccactctgtgttattcagtatgacagtaggtatg 384

                                                                       
Query: 185 agagttcagacatctatgagctaccattgtgagctaagtgagcctttctattctcagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagttcagacatctatgagctaccattgtgagctaagtgagcctttctattctcagagg 444

                                                                       
Query: 245 gataaagttggaaatggtcccccttgtacggtgtgtatatgtctctgctttctttttttt 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 gataaagttggaaatggtcccccttgtacagtgtgtatatgtctctgctttctttttttt 504

                                                                       
Query: 305 ccatttaacaaaaattttactgggtatttatttcatttacatttcctattttatcccaaa 364
           |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||
Sbjct: 505 ccatttaacaaaaattttactgggtatttatttcatttacatttccaatgctatcccaaa 564

                                                
Query: 365 agttcccacacgctcccccacccacgcacacccactt 401
           ||||||||||||||||||||||||| |||||||||||
Sbjct: 565 agttcccacacgctcccccacccacacacacccactt 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)