Query= MSMg01no168_d10.b1 MSMg01no168_d10.b1 CHROMAT_FILE:
MSMg01no168_d10.b1 PHD_FILE: MSMg01no168_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:17 2005
(308 letters)
>mm_chr2_73418918_73419626
Length = 709
Score = 536 bits (277), Expect = e-157
Identities = 298/305 (97%), Gaps = 1/305 (0%)
Strand = Plus / Plus
Query: 5 gaattccatatacgatcatatgcagcttttaacaaagatagttggttttttttttt-cct 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattccatatacgatcatatgcagcttttaacaaagatagttggtttttttttttccct 264
Query: 64 tctgtgaactggttttcccccagggccctaggcagcaattccctcccctcatctctgtta 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 tctgtgaactggttttcccccagggccctaggcagcaattccctcccctcatctctgtca 324
Query: 124 ggcagtaccaagcccacccagagcttagctgggcccactgcagcctcctgtgtcctgtta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcagtaccaagcccacccagagcttagctgggcccactgcagcctcctgtgtcctgtta 384
Query: 184 ttacagcgcagcacttcgtgggaagtcttccaccccagtggcatttgttccagagtcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacagcgcagcacttcgtgggaagtcttccaccccagtggcatttgttccagagtcctg 444
Query: 244 tttcctgctgcctccctcaacccattttttttcagggaagcagagagcagagcccttcaa 303
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 445 tttcctgctgcctccctcaacccactctccctcagggaagcagagagcagagcccttcaa 504
Query: 304 cgtct 308
|||||
Sbjct: 505 cgtct 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space: 209300
Effective search space used: 209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_d10.g1 MSMg01no168_d10.g1 CHROMAT_FILE:
MSMg01no168_d10.g1 PHD_FILE: MSMg01no168_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:17 2005
(280 letters)
>mm_chr2_73562687_73563366
Length = 680
Score = 493 bits (255), Expect = e-144
Identities = 273/279 (97%)
Strand = Plus / Minus
Query: 1 cagagagcagaaactgtagggagctaaggcagctgagaggagggtcactgaagaagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cagagagcagaaactgtagggagctaaggcagctgagaggagggtcactgaagaagatgg 420
Query: 61 gggttgtgaagagataaggatgagaagctatggacagtgtaggcatagtgctcccagatg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 419 gggttgtgaagagataaggatgagaagctatggacagtgtaagcatagtgctcccagatg 360
Query: 121 gctggctttcatggtcccttaattctaacgacccaccagcatccactgaattaacttgca 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 359 gctggctttcatggtcccttaattcgaacgacccaccagcatccactgaattaacttgca 300
Query: 181 caggtgccatcatgatttgctccatggaaaggatacaaattggctcagctcagacagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caggtgccatcatgatttgctccatggaaaggatacaaattggctcagctcagacagaga 240
Query: 241 ttttacttgaagcaggggcagaacaaatactgaagtgga 279
|||||||||||||||||||||||||||||| |||||
Sbjct: 239 aaatacttgaagcaggggcagaacaaatactgacgtgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
