BAC Information

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BAC

Clone NameMSMg01-168N11
Chromosome2 (Build37)
Map Location 126,473,015 - 126,620,767
singlet/doubletdoublet
Overlap geneGabpb1, Usp8, LOC100043714, Usp50, Trpm7
Upstream geneShc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc
Downstream gene2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168N11.T7 (MSMg01no168_n11.b1)MSMg01-168N11.TJ (MSMg01no168_n11.g1)
ACCAG365901AG365902
length705703
length of high quality
(start - end)
269 (46 - 314)279 (75 - 353)
definitionCHROMAT_FILE: MSMg01no168_n11.b1 PHD_FILE: MSMg01no168_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:21 2005CHROMAT_FILE: MSMg01no168_n11.g1 PHD_FILE: MSMg01no168_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,473,015 - 126,473,279)(126,620,489 - 126,620,767)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACCGTTAGAAACTTTGCCTTTGCCTTGCCTAAGTAAAACAAAA
CAAAACAAACAAACAAAAAACCACAAGTTAATACTGTCAAAAGTCCTTTC
CCATAGCAATTCTACACCTATCTAAAAACAAAAAAGATGTGTGCATAAAG
AAATGTTCACTAACATCCTAACAGCTTTACTGTAGCTACTAAACAGTAAA
ACTAGAGATAACCAAATACTTATTGGCAGTAAATAGACTGTGGTCATCAT
ACAATGGTATACAAGTCTCTAAAATGCTTATGTGTAAAACATGAGTATAA
GTAATTTAATATTTGTCCCCCCGCAACCACAAATGTACTGTCTGCCTTCT
GCTGCGATTTACGCCCCGACAACACTAAAGAGAACGTTTCAAACCTCCAT
AATAACCACACATTTATTAGGACTGCACGTTTTTTTTATAGAACACTACA
CTATATAACCTACGAATACTAAGGACTAATTTATCCCAACTTTACTATCT
GACTCCAACAACTGTCCCTATCATGTGGCCAATGCACTGCTATACTGTTT
TGCCCCATCTGACCTCTATGTTGTCCCCACCGAATCACAATCAAAAATTT
CCATACCCCAATTGACACATGTATCCGTCCCCCTATTATGCTTTTCCAAG
CCTTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTGGTGGCACCTTCATAAGTA
CACGTGAGCTCTTCTTCCATTACTCCAGGTCCAGAGGGTTTGGCTCCTTT
TTCTGGTCTGTGAGGGCACTAGACACACATATGATATGCATACATAAATA
CAAGTAAAACACTTGCACACACCTAGAAAAGTAAACACAGCTTAGAGGGA
GAAAATTATTTTAATTTTGCTTAAAAATAAAAAATTTTAAAATGTCAGTT
TAAATATTTTTTAAAGCCTTTAACTGTACTTTTACACTTTGATTAAATTG
AGAATTTTTTTTCTCTCCTGTCCTTTNACCCGTTCATTTTGGTGGGNATA
GTTATACATGCCTCAAAAAACAAAAAAAAAAAAACAGAGTCTTGTGTATC
TCTGAATTTTAAGGCCAGCCTGGACTACATAGGCAATTCTAGGTTAGCCA
AGGCTAAATAAACTTTCTTTCTCAAAATGGGGTCGAGGGTGTATTATTTC
TTTGGGAGTCCCACAAACTGGATTAATCGCATTCACTGCCTGCCATACCT
TCTGTTTACCTGCGCCGCCTTCTTTTTTTTCTTTACCCCATCCCGTTCTA
TTGTTGCTCCCCTCTTACTCATGATGACCCTAAACATTATCTTGATAACA
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_n11.b1 MSMg01no168_n11.b1 CHROMAT_FILE:
MSMg01no168_n11.b1 PHD_FILE: MSMg01no168_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:21 2005
         (269 letters)



>mm_chr2_126472811_126473479
          Length = 669

 Score =  513 bits (265), Expect = e-150
 Identities = 265/265 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaccgttagaaactttgcctttgccttgcctaagtaaaacaaaacaaaacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaccgttagaaactttgcctttgccttgcctaagtaaaacaaaacaaaacaaa 264

                                                                       
Query: 65  caaacaaaaaaccacaagttaatactgtcaaaagtcctttcccatagcaattctacacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacaaaaaaccacaagttaatactgtcaaaagtcctttcccatagcaattctacacct 324

                                                                       
Query: 125 atctaaaaacaaaaaagatgtgtgcataaagaaatgttcactaacatcctaacagcttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctaaaaacaaaaaagatgtgtgcataaagaaatgttcactaacatcctaacagcttta 384

                                                                       
Query: 185 ctgtagctactaaacagtaaaactagagataaccaaatacttattggcagtaaatagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtagctactaaacagtaaaactagagataaccaaatacttattggcagtaaatagact 444

                                    
Query: 245 gtggtcatcatacaatggtatacaa 269
           |||||||||||||||||||||||||
Sbjct: 445 gtggtcatcatacaatggtatacaa 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no168_n11.g1 MSMg01no168_n11.g1 CHROMAT_FILE:
MSMg01no168_n11.g1 PHD_FILE: MSMg01no168_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:21 2005
         (279 letters)



>mm_chr2_126620391_126621069
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgtggtggcaccttcataagtacacgtgagctcttcttccattactccaggtccag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgttgtggtggctccttcataagtacacgtgagctcttcttccattactccaggtccag 318

                                                                       
Query: 61  agggtttggctcctttttctggtctgtgagggcactagacacacatatgatatgcataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agggtttggctcctttttctggtctgtgagggcactagacacacatatgatatgcataca 258

                                                                       
Query: 121 taaatacaagtaaaacacttgcacacacctagaaaagtaaacacagcttagagggagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaatacaagtaaaacacttgcacacacctagaaaagtaaacacagcttagagggagaaa 198

                                                                       
Query: 181 attattttaattttgcttaaaaataaaaaattttaaaatgtcagtttaaatattttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attattttaattttgcttaaaaataaaaaattttaaaatgtcagtttaaatattttttaa 138

                                                  
Query: 241 agcctttaactgtacttttacactttgattaaattgaga 279
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 137 agccattaactgtacttttacactttgattaaattgaga 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)