BAC Information

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BAC

Clone NameMSMg01-169B01
Chromosome2 (Build37)
Map Location 83,562,583 - 83,562,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15
Downstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B01.T7 (MSMg01no169_b01.b1)MSMg01-169B01.TJ (MSMg01no169_b01.g1)
ACCAG366052AG366053
length717743
length of high quality
(start - end)
318 (36 - 353)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no169_b01.b1 PHD_FILE: MSMg01no169_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:40 2005CHROMAT_FILE: MSMg01no169_b01.g1 PHD_FILE: MSMg01no169_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATT
TAACCTGGGCTAATAAATGAGGGTGTCTACTAGCCCACCCCACTTAAAAA
AAAAAGAAAGAAGCAAAATATTTTGTTAGCAAATTGTAAGCGTAGTAGAA
ATGTTCAACTTTCTGTGTTTAAGTCCTAGTTAGATTGTTCATTTGTGGAA
GAAGCACAAAGAATAACTTCCAGACTTGGAATTTTTGTGGTTAAAGAACT
GTATTAAGGTGGGATTTTAAATGGCTATAGTTAGAATAAGCTGTGCAGTT
TATTCACATGTTAAGAACAAATCTCAAGTAGTTATCATGTAAGAAAATGT
TTAATTTTTCCCCCCCCCTCCAGTAAAAGGTACGATTTCTTTCAAAAATT
GTGTATGATGACCATCTGAATGAGAAACTGAAAATCCCAGACTTGTCTTT
AGTCTCTAGACCTGAGGCCAGCGTGCCCTTCAGAAAGAGATGCATAGAAC
ACAGGGAGTGCACAGAACATTCTTGCTCTCCACGAATCATTGTCTACCTC
TTCAACCCCCATTTTTTGACTCCCAATCGGTGACTACGGAACGAAAGAGC
CATCCTATAGTCCTCCCCGCCGCCCATTTTCCCCCCCTTGGTATTTCCCT
GCTTTCTGCAACGTGTTTCCTATCATATACTGTTCTCCAATCCCCGCCCG
TTTTGTATTTATCTTTG
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATTGC
TGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTTAGGTGACAGCAGATGCTGGCGAGGATGTGGACAAAGAGG
GACACTCTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTAGCGGTTTCTCAGAAAATTGGACATAGTACTACCGGAGGAA
CCCGCAATACCTCTTTTGTTTATATACCCACACCATGTTCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
TTGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCCTCCTGA
GTGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTAGAATACCTAAGATATAAGATAAAATT
CGTGAAACTCATGAAACTCAAGAGAACGAAGACCAAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b01.b1 MSMg01no169_b01.b1 CHROMAT_FILE:
MSMg01no169_b01.b1 PHD_FILE: MSMg01no169_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:40 2005
         (318 letters)



>mm_chr2_83562379_83563095
          Length = 717

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatttaacctgggctaataaatgagggtgtctactagcccaccccacttaaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattccaatttaacctgggctaataaatgagggtgtctactagcccaccccacataaaa 264

                                                                       
Query: 65  aaaaaagaaagaagcaaaatattttgttagcaaattgtaagcgtagtagaaatgttcaac 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaa-gaaagaagcaaaatattttgttagcaaattgtaagcgtagtagaaatgttcaac 323

                                                                       
Query: 125 tttctgtgtttaagtcctagttagattgttcatttgtggaagaagcacaaagaataactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttctgtgtttaagtcctagttagattgttcatttgtggaagaagcacaaagaataactt 383

                                                                       
Query: 185 ccagacttggaatttttgtggttaaagaactgtattaaggtgggattttaaatggctata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccagacttggaatttttgtggttaaagaactgtattaaggtgggattttaaatggctata 443

                                                                       
Query: 245 gttagaataagctgtgcagtttattcacatgttaagaacaaatctcaagtagttatcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttagaataagctgtgcagtttattcacatgttaagaacaaatctcaagtagttatcatg 503

                     
Query: 305 taagaaaatg 314
           ||||||||||
Sbjct: 504 taagaaaatg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)