BAC Information

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BAC

Clone NameMSMg01-169L04
Chromosome2 (Build37)
Map Location 162,152,067 - 162,152,372
singlet/doubletsinglet
Overlap genePtprt
Upstream geneLOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L04.T7 (MSMg01no169_l04.b1)MSMg01-169L04.TJ (MSMg01no169_l04.g1)
ACCAG366490AG366491
length735785
length of high quality
(start - end)
313 (45 - 357)---
definitionCHROMAT_FILE: MSMg01no169_l04.b1 PHD_FILE: MSMg01no169_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005CHROMAT_FILE: MSMg01no169_l04.g1 PHD_FILE: MSMg01no169_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGGGTCACGTGGACAGCAGCAGCACAGAATAGAAAGCATTTAGG
GTTTAAGTAGGCATCTTGACATGTTTGTGCCAGAAATCACCTTGGATATG
TAGGTTTGACCCTGGTCACCAGAAGGCTAACTGGACTTTGAAGACAGATG
CCATAATCTAGAAGCTCAGTCATTTCATGCACCTACTACATTCATCTAGA
GAATGCTTGTAGATTTTAGAGGCAATGACTTAGGGTAAAAAGAGGCTTTG
AGTGTTTCTATCCTCAGAATAAAAAAATAAAGTCTTTCTAGCAGCCAAAA
TGGCCCTTCTTTTTTTCCCCGNACTAGCCCCCGTAAAAGAGACACCGTTC
CTGAATAGCAAATCTGACTTTTTCAAACACAACCAGCATAGCATCCTTCC
AAAAATGTTCTCTCTTGCTAGTTCTGAATTCAGAGATCCACAGGAAATAT
ATCTCATTGTTTCATAAAACAGTTTCCTGGAGTGACCACATGGGATGGTC
GCATGTTCTGAGTCATACATTGTTAGTGATATCATCCTTGTGAAGACATC
ACAGAGTACATCTACGTGAACCAGGATGTCTATATCATTAAGCAGTATAA
TCTTAGAAGATCACTGTCATGTATATATGACCTGTCACTGGCCAAAACAT
CATTATGCAATACAGGGCTATAAGCCGAATCAACG
AGCATGAAGCCGGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGACTTTGGAAGGGGCATCCCCA
AAGCCCTGAATTGGCTCAAATATGATTAAGAACTCAATCGAAGAAGGGAA
AGGGGATCTGGGTTCCCGGAAGGCGAATGGAGGGTTGGCTGGCCCCCAAA
GGGCCGAATGGAGGAAGGGACCAAAGGATTACCCAGGAACCATCCTGGGA
AAGGGGCCCAAGAAGCCGGAATCCAAATAATCCGCTTAGTAGTTTTCTCC
AGAAGCCTCTTGGGAAGGGCCTTTTTGGTTCTTCCCCCTTAACCCCGGGG
GCTGGAGGAAAACTTTTTCGGTAATTTCCCCCCCCCCCCCCTTTCTCCAT
TTTTCTGGGAAAGAAGGATTTTTGGGGAACAAAAAAAAAAAAAAAAGGGC
TTGGGCGGGGGGGCCCCCTCCCATCTACCCCGGACCTTATTTTCCCCCTA
AAACCCACAGTCGCGCAAATCCCTTCCACACCAACAAACCCATTCCTCCC
AATTCCAAGCCGTACGTAACCTCCATTTCACCCCCGATAAGGCCCCCCGC
ACCTTATCCCCACCCCCCCTTCTTCCCTAAACACCGCACGTAATCATCCC
CCTGGGCCTACCCAAGCCCTCCAAACATATCGTCCCTCCCTCCAACTTCT
GTTCCTCCCTCTTCCGCGCATATCCACCCCGCTCCTTCCCCCCCCCGCCC
TTACCTCGCCTACCCTCCTCTTCTCATAATACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l04.b1 MSMg01no169_l04.b1 CHROMAT_FILE:
MSMg01no169_l04.b1 PHD_FILE: MSMg01no169_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:27 2005
         (313 letters)



>mm_chr2_162151864_162152577
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagagggtcacgtggacagcagcagcacagaatagaaagcatttagggtttaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagagggtcacgtggacagcagcagcacagaatagaaagcatttagggtttaag 263

                                                                       
Query: 64  taggcatcttgacatgtttgtgccagaaatcaccttggatatgtaggtttgaccctggtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggcatcttgacatgtttgtgccagaaatcaccttggatatgtaggtttgaccctggtc 323

                                                                       
Query: 124 accagaaggctaactggactttgaagacagatgccataatctagaagctcagtcatttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accagaaggctaactggactttgaagacagatgccataatctagaagctcagtcatttca 383

                                                                       
Query: 184 tgcacctactacattcatctagagaatgcttgtagattttagaggcaatgacttagggta 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tgcacctactacattcatctagagaatgcgtgtagattttagaggcaatgacttagggta 443

                                                                       
Query: 244 aaaagaggctttgagtgtttctatcctcagaataaaaaaa-taaagtctttctagcagcc 302
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 aaaagaggccttgagtgtttctatcctcagaataaaaaaaataaagtctttctagcagcc 503

                 
Query: 303 aaaatg 308
           ||||||
Sbjct: 504 aaaatg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)