BAC Information

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BAC

Clone NameMSMg01-169N12
Chromosome2 (Build37)
Map Location 85,615,880 - 85,616,192
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013
Downstream geneOlfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169N12.T7 (MSMg01no169_n12.b1)MSMg01-169N12.TJ (MSMg01no169_n12.g1)
ACCAG366592AG366593
length721783
length of high quality
(start - end)
322 (42 - 363)---
definitionCHROMAT_FILE: MSMg01no169_n12.b1 PHD_FILE: MSMg01no169_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:39 2005CHROMAT_FILE: MSMg01no169_n12.g1 PHD_FILE: MSMg01no169_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCGG
AATTCATCAAATGAAATGCAGGACACACATATGCATTAAGTATCAACACA
ACAATGATATGTTGAAAGGAGGTATCTCAAATATCAAGACTACCTTAGCA
TATACACATTTCTTCTGCCTCTTCTCAATCTCCAACCACTTATTCACAAT
TTAATATATTTTTTGTTTGCCTTTGAAAATGCTCATGTGGGTGAGGGTGC
ATTATGGGAAGGGGTTCATGTGTACATGTGTGTATGTGTGGAGCTTAGAG
GGCAACTTTTGGTGTTGTTCCTTTAGCTTGTAATTTTTGTTTGTTTGTTT
GTTTGTTTGTTTGTTTCCCCCCCCCCCCTCAGTGGCCTGGAATCCATCAA
ATAGGCTATGCTGAAGCCAGTGAACAAGAGGGATGCTTTAGCCTTGGCCT
CTTTAGTACTGGCATCAAAAGTGTGTACTACAGTGTTTGGTTTATTTTTT
AAAGTTATTTCTTGGCATTAACCTAAACTTTTCATGCTCATAAGGCAAGC
TCTTTAGCAAATGAGCTATTCCTCAGTATTTTGGTAGTAATTTTATAATT
GGGAAATAAACCAAGTCTATTCAATCAAAATATTTGTCATTTAATTGGGT
GAAAATAAATTATGATTGACTCCATGATATTTTTTCTATTTTTCTTTTGT
TAAAGATAGTTATATTTTCAN
AATGATAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAAGGTCAAAAAGCGGAAGGGGCC
AAGGGAGAACCCCTCTGCCCCCCTGGAAAGGGAAAGAAAAACCGGCGGAC
CTTTAAGTTAATTTTGGCTTGGTTTCCAAATAATAAAACCCGCATAATCC
CCTTTTGGGGGTTAAACCCCTTCCAACCACCTTTTTAAAAGGGAAGGAAC
CATTGAAAAGATCCCATGGAACCACTCAAAGAAATTTTGGATCAAAAATA
GGACCGGGGTCCCGCTAAATTGTCTACAAATGGTAAAAGGTTGGCCGGTC
ACAAATTATTTTGGATAANTTTACCCCCCCCCCCCGCCCCAGGCAATCCA
AAGATAAGGATGGAATTTGAAATAATCGGAAACAACAAAAAGAAAATCCA
AGGGTGGGGTGGCGGAGCGTTACGGTAACTCGGCATACCATACCTTGCAG
TCCCATTAAAAAACAATAATACCAAGTTTAAGCCCTTAAAATCTCCAATG
GATCCCAGGCTCCACAGGATTCTAACCGGCCCTTTCAAAATTTTCCCCAA
CGGGCCTTTCCGGCCCTCTTGGGAACACATTGAAACCCTTTTCTAAAAGC
GGCTCTTTCCCCCCATTCAAAAAATTTCCTCCGTCGGCACGAATTCCCCG
GGTTTAACCCTCTGCCACCCACATGTTCTCAAACTGGGCATCTCCCTGCG
ATTTCCGACGGCCCTTGCCAATCTCCTCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_n12.b1 MSMg01no169_n12.b1 CHROMAT_FILE:
MSMg01no169_n12.b1 PHD_FILE: MSMg01no169_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:39 2005
         (322 letters)



>mm_chr2_85615672_85616393
          Length = 722

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcatcaaatgaaatgcaggacacacatatgcattaagtatcaacacaacaatgata 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcatcaaatgaaatgcaggacacacatatgcattaagtatcaacacaacaatgata 268

                                                                       
Query: 69  tgttgaaaggaggtatctcaaatatcaagactaccttagcatatacacatttcttctgcc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgttgaaaggaggtatctcaaatatcaagactaccttagcatatacacatttcttctgcc 328

                                                                       
Query: 129 tcttctcaatctccaaccacttattcacaatttaatatattttttgtttgcctttgaaaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 tcttctcaatctccaaccacttattcacaatttaatatattttttgtttgcctttaaaaa 388

                                                                       
Query: 189 tgctcatgtgggtgagggtgcattatgggaaggggttcatgtgtacatgtgtgtatgtgt 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgctcatgtgggtgagggtgcattatgggaaggggttcatgtgtacatgtgtgtatgtgt 448

                                                                       
Query: 249 ggagcttagagggcaacttttggtgttgttcctttagcttgtaatttttgtttgtttgtt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggagcttagagggcaacttttggtgttgttcctttagcttgtaatttttgtttgtttgtt 508

                        
Query: 309 tgtttgtttgttt 321
           |||||||||||||
Sbjct: 509 tgtttgtttgttt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)