BAC Information

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BAC

Clone NameMSMg01-169O18
Chromosome2 (Build37)
Map Location 85,615,903 - 85,669,796
singlet/doubletdoublet
Overlap geneOlfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018
Upstream geneUbe2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013
Downstream geneOlfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O18.T7 (MSMg01no169_o18.b1)MSMg01-169O18.TJ (MSMg01no169_o18.g1)
ACCAG366646AG366647
length808709
length of high quality
(start - end)		168 (132 - 299)631 (76 - 706)
definitionCHROMAT_FILE: MSMg01no169_o18.b1 PHD_FILE: MSMg01no169_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:44 2005CHROMAT_FILE: MSMg01no169_o18.g1 PHD_FILE: MSMg01no169_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,615,903 - 85,616,070)(85,669,166 - 85,669,796)
sequence
ACCAATTCCTGTCCCCAAAACTCACCACATATTACCCCGCCCTGATATAA
TTNNNTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCNGGAATCATCATATGAAATGCAGGACACACATATGCATTAAGT
ATCAACACAACAATGATATGTTGAAAGGAGGTATCTCAAATATCAAGACT
ACCTTAGAATATACACATTTCTTCTGCCTCTTCTCAATCTCCAACCACTT
ATTCACAATTTAATATATTTTTTGTTTGCCTTTGAAAATGCTCATGTGGG
TGAGGGTGCATTATGGGAAGGGGTTCATGTGTACATGTGTGTATGTGTGG
AGCTTACAGGGCCACTTTTGGTGTTGTTCCTTTAGCTTGAAATTTTTGTT
TGAACGATTGATTGTTTTATTGTTTTTTGACCCCCCCCCCCCCCGCCCTG
GAATCCATCATATAGGCTATGCTGAACCCTGCGCACAAGAAAAAATGCTT
TATCCCTGGCCGCTTTAGTACTGACGCCAAAAGTGTGTACTAAAGGGCCC
GGCTAATCTTTTTAAGATATATCCCGGCATTATTTGCATCCTTCTCACGC
ACATAAAAGCTCGCCACCCTTAACCCATCGCTCCCATTCCCTAAGTACTT
TTGCTGTGTCCACCATTATAAATTTGGCGAGAAATATTAAAAGTCCCGAC
CACCCCTCAACAAATACTTGTGCCCCATTATACATTTGTGTTTGCCCCAA
ATATACCTCTCCGGAAATTGCACCCACAGCCGCGCATATTATTTACCTCT
CCGATCAN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGGTCAATAAGCTGGAGTGGC
CAAGTGAGGACACCTCTTTCCCCCTTGCAAGTGAGAAGAAAATCTGCTGA
ACTTTTAGTTTAGTTTTGTTTTGTTTTCAAATTATTAGAACAGTATAAAT
CACATTTTGGGGTTAAATCACTTTCAATCATCTTTTTTAAATGGTAGGTA
TCATTGAAAATATCTCAATGAATCACTCAAAGTAATTTTTGATCAAATAT
ATGACCAGTGTTCCGCTAAATTGACAACACATTGTAATATGTTTGTCTGT
CAGTAATTTATCATTTACTAATACATCTGTATTGCACAATGTATCCAAAG
ATCAGATTGTATATAAAATAATTGTTTCCTCCATTGTAAATTCAAAGTTG
TAATGGGATGTTAATGTTAGTTGCATAACATACATTGAGTTCTATGAAAA
ACAATAAGCAAAGTTTTAGCATTTAAATTCCAATTGATCTATGTTCAAAG
TATTTTAGTGTCTTTTAATATTTCCTAAATGTCTTTCAGCCTCTTGTTAT
ACAATGAACACTTTTTAAAGTGCTTTTCAGCCATTAGAAATTTCTCAGTT
GAGAATTCTCTGTTTAGCTTTGTATCCCATTTTTAATTGGATTCTTTGGT
TTGTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o18.b1 MSMg01no169_o18.b1 CHROMAT_FILE:
MSMg01no169_o18.b1 PHD_FILE: MSMg01no169_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:44 2005
         (168 letters)



>mm_chr2_85615703_85616270
          Length = 568

 Score =  310 bits (160), Expect = 4e-89
 Identities = 166/168 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacacatatgcattaagtatcaacacaacaatgatatgttgaaaggaggtatctcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacacatatgcattaagtatcaacacaacaatgatatgttgaaaggaggtatctcaaat 260

                                                                       
Query: 61  atcaagactaccttagaatatacacatttcttctgcctcttctcaatctccaaccactta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaagactaccttagcatatacacatttcttctgcctcttctcaatctccaaccactta 320

                                                           
Query: 121 ttcacaatttaatatattttttgtttgcctttgaaaatgctcatgtgg 168
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ttcacaatttaatatattttttgtttgcctttaaaaatgctcatgtgg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no169_o18.g1 MSMg01no169_o18.g1 CHROMAT_FILE:
MSMg01no169_o18.g1 PHD_FILE: MSMg01no169_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:45 2005
         (631 letters)



>mm_chr2_85669002_85670032
          Length = 1031

 Score = 1189 bits (615), Expect = 0.0
 Identities = 627/631 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaggtcaataagctggagtggccaagtgaggacacctctttcccccttgcaagtgag 60
           |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||
Sbjct: 795 aaaaaggtcaataagctggagtggccaagtgaggacacctcaatcccacttgcaagtgag 736

                                                                       
Query: 61  aagaaaatctgctgaacttttagtttagttttgttttgttttcaaattattagaacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aagaaaatctgctgaacttttagtttagttttgttttgttttcaaattattagaacagta 676

                                                                       
Query: 121 taaatcacattttggggttaaatcactttcaatcatcttttttaaatggtaggtatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taaatcacattttggggttaaatcactttcaatcatcttttttaaatggtaggtatcatt 616

                                                                       
Query: 181 gaaaatatctcaatgaatcactcaaagtaatttttgatcaaatatatgaccagtgttccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaaaatatctcaatgaatcactcaaagtaatttttgatcaaatatatgaccagtgttccg 556

                                                                       
Query: 241 ctaaattgacaacacattgtaatatgtttgtctgtcagtaatttatcatttactaataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctaaattgacaacacattgtaatatgtttgtctgtcagtaatttatcatttactaataca 496

                                                                       
Query: 301 tctgtattgcacaatgtatccaaagatcagattgtatataaaataattgtttcctccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctgtattgcacaatgtatccaaagatcagattgtatataaaataattgtttcctccatt 436

                                                                       
Query: 361 gtaaattcaaagttgtaatgggatgttaatgttagttgcataacatacattgagttctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaaattcaaagttgtaatgggatgttaatgttagttgcataacatacattgagttctat 376

                                                                       
Query: 421 gaaaaacaataagcaaagttttagcatttaaattccaattgatctatgttcaaagtattt 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaaaaacaataagcaaagttttggcatttaaattccaattgatctatgttcaaagtattt 316

                                                                       
Query: 481 tagtgtcttttaatatttcctaaatgtctttcagcctcttgttatacaatgaacactttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagtgtcttttaatatttcctaaatgtctttcagcctcttgttatacaatgaacactttt 256

                                                                       
Query: 541 taaagtgcttttcagccattagaaatttctcagttgagaattctctgtttagctttgtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taaagtgcttttcagccattagaaatttctcagttgagaattctctgtttagctttgtat 196

                                          
Query: 601 cccatttttaattggattctttggtttgttg 631
           |||||||||||||||||||||||||||||||
Sbjct: 195 cccatttttaattggattctttggtttgttg 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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