BAC Information

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BAC

Clone NameMSMg01-170L01
Chromosome2 (Build37)
Map Location 153,230,864 - 153,231,166
singlet/doubletsinglet
Overlap genenone
Upstream geneZcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L01.T7 (MSMg01no170_l01.b1)MSMg01-170L01.TJ (MSMg01no170_l01.g1)
ACCAG367176AG367177
length733733
length of high quality
(start - end)
312 (50 - 361)43 (77 - 119)
definitionCHROMAT_FILE: MSMg01no170_l01.b1 PHD_FILE: MSMg01no170_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:43 2005CHROMAT_FILE: MSMg01no170_l01.g1 PHD_FILE: MSMg01no170_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGATTTTGTTAGGCTTACCTTCTAGGAACTATCTCATGAAG
CACTTGGTTCTGTCAACAGCTGTGTGCATCCTGACAGTATGCAGCAGACG
CACTTCTTAGGAGTGCCTTTAGAATGGCAAGACAGCACCCCAATAGTACT
GTGCTAGGAAATTTTGTGCCAGGCTTTCAAATTAATGTAATGGAAACAAG
ATTAAGTACTGCCCAATTTGGGGTACAAGTAGCAATCTCTAGGTCACGAA
GCCCCACCTTCTCTACAGCTTACAATAGCACCCTAACCTGAGGGAAACTG
ATATTGTCTTTGTGTACACCCCCCCCACCCCTTTCAAACAAGGTCCTATT
TCATCAAGAGCGTATTTGATGACAAACTGACCTTGTGTGTCCCGTGTCCC
TTCCTTATTGGTCTTCTAATCTTAGCACTGCACTCAGTAGCTACAGAATG
GGGCTGAAAACCAAGTGTCACCTCACAGCCTGCCTGGTACCCCTACCTCA
GCACAGCCCACAGGCCTGAATCCTGAGCTCCCTCTGGGACAAGGGTGACA
CAAGGCATCAGCTACTCCCAAGTTAAAAGTTTTAAGGCTATGGAGCTATT
AATCCTGGCTACCTGAAGTACTTCCTAAGTGGGAAGTGTACCAATCACTC
CATGTCAATGCCACTAGCACCCATTTGGACAAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTAGCCAGGGCTACATAGTG
AGACTCTGGCAAAACAAAACAAACCCAAAACCAGATAGACCTTTGTGTTT
GAAGCATTCACAGCCTGCATAGACAGCCAATACAAAAAGCTGGAAAATGA
AAACAGACATATAAATGACTGAAGTGTTTATAGNNCTAAATGGGGTAAAA
GNNCATTTACCCAGCATGTCAGAGATACTAGGTTAAATACCCAGNACATA
AATACATAATCTGATTCACAGCTGTAATTCTAGCATGTAAGAGGTGGAAG
TAAACATGCCGCGAAAGGAATTGTGTTTTTTTTTTTTCTCCACCGCCCCC
CCCCGCGCCCTTAAACAAAAAAGTTCCCGGAATAATTAAATCTCCGGCCT
TCAAAAAACCAAAAAAAAAAAAACAAAAACCCCCTCCAAGGGCCCCGGGC
CNNNNNNNNNNNNNAAAAAGANAAGTAGGGNTTGNNNNNNNNNNNNNNNA
AGTTGGTTTTATTACTTGTGCCTTCCCCNNNNCCCCCCCGGATCNTGGGN
NNNNNNNNNNGGGGCGATAAAGGGCCCCTTTATAAAACCCCTTCGCGGCG
AAATAAAGCGNCTTTAAAAAGTTGGGGTTATTNNTTNNGGCGCGGGGGGA
AAAAAAAACGTTGTGCCCTTTTTTCATTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l01.b1 MSMg01no170_l01.b1 CHROMAT_FILE:
MSMg01no170_l01.b1 PHD_FILE: MSMg01no170_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:43 2005
         (312 letters)



>mm_chr2_153230660_153231371
          Length = 712

 Score =  555 bits (287), Expect = e-162
 Identities = 299/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattttgttaggcttaccttctaggaactatctcatgaagcacttggttctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaattcagattttgttaggcttaccttctaggaactatctcatgaagcacttggttctgt 448

                                                                       
Query: 65  caacagctgtgtgcatcctgacagtatgcagcagacgcacttcttaggagtgcctttaga 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caacagctgtgcgcatcctgacagtatgcagcagacgcacttcttaggagtgcctttaga 388

                                                                       
Query: 125 atggcaagacagcaccccaatagtactgtgctaggaaattttgtgccaggctttcaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggcaagacagcaccccaatagtactgtgctaggaaattttgtgccaggctttcaaatt 328

                                                                       
Query: 185 aatgtaatggaaacaagattaagtactgcccaatttggggtacaagtagcaatctctagg 244
           ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatgtaatggggacaagcttaagtactgcccaatttggggtacaagtagcaatctctagg 268

                                                                       
Query: 245 tcacgaagccccaccttctctacagcttacaatagcaccctaacctgagggaaactgata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcacgaagccccaccttctctacagcttacaatagcaccctaacctgagggaaactgata 208

              
Query: 305 ttg 307
           |||
Sbjct: 207 ttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)