BAC Information

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BAC

Clone NameMSMg01-170L21
Chromosome2 (Build37)
Map Location 153,623,378 - 153,623,691
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541
Downstream geneLOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L21.T7 (MSMg01no170_l21.b1)MSMg01-170L21.TJ (MSMg01no170_l21.g1)
ACCAG367213AG367214
length753732
length of high quality
(start - end)
319 (44 - 362)568 (72 - 639)
definitionCHROMAT_FILE: MSMg01no170_l21.b1 PHD_FILE: MSMg01no170_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:47 2005CHROMAT_FILE: MSMg01no170_l21.g1 PHD_FILE: MSMg01no170_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGATATTGGTGGCTACAAATGTATCCGGGCCTTCACCGTTATTGA
TCTGGATAGCTGTGTCATGGTCATGGACTATTGGTGAGTCTCATAGGAGA
TGGGTACAGGATCTTGGCAGCCACCACATCACTGGGAAGGGGGCTGGGGC
CCCAGGGAGGCACTAGGAGAGCTGGTTCTGAGCTCATCGCCGTACGGTTC
CTATATTGTCCCTCCCTGATTCTCTCCCTGGGTCTTGCAGTCACTCTACT
CTTGAATTATGCTTGCTCACCCCCCCTCCCCCGCCCCTTTCTTATCCTGT
TATCGACCAAGTTTTAGTTGACCCTCACCCCGCTGCATTGAGGTCTCTGG
GAAGTAAAAATGGTTGAAACAGAACCTGAATTTTGGTTCAGTGATGACTA
GGGTATGGTTGGCACTGGGGTTGAGACCCAGACCAAAGCTGGAAGTCTTG
TTAGAACTGTCCTTGTCCCTAAGATGACAGGGCCTTGGCACAAGAGCCAG
GGCAGAAGAGTTAATAACCTAAATGCCTCAAGCAGCCTGAAAAACTCCAT
GCAGGAATATCTGATACACTGATATTGTCAGTCCTGTCAGTGGGCAGTTA
GGAGCAGAATGGTAAGGGTCAATGTGTCATCAGGACCTCCCAGGAGAGCT
CCTGGCAAGGATGCCAGCATGGTGAGGGCCTTCTTCATGAGTTCAGGCTA
GCN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCATTAACTCAAAACTGGCACTTGAGAA
CTCAGGTTCCCAGGACAGACAGGAGAGCCACACCTAACGTTAAAGAGTAC
ACGACGCTAATCAGCTGCTTAGAACTTCATGACTGTGGAATGCAACACAT
CTAGACCCAAATGGTCCTGGGCTACCTTGAGTTCCCTTGACAGCCATTCA
CTGCCCACCTCTATGTCTGAGGAAGCATCTTTCGCCTGTGCTAGCTTAGC
AGACCAGCAGCGTTCATTGACCCTAAGGCTGAGAAGGATATCAGATAGCA
TCTGAGACCAACAGCAGTGTTTCCTACTTTCCTACCTCGCTCCCCTCCCC
GATGCTCCGGCCAATATATTTGGGGAAATGCCTTGGATTAAGGCTTGCTT
TCATCCTGTGACTATAAACACTCATGCAAACACTTCAACATCAGAACATG
TAATTAGGGGCAACCTAAATCCATGTTCCCAGACCGCAGTTATTCATATT
TGGTTTCATACTCATATTCATCTTCTTCCCGGTGGGTGAGACTCATAGTT
AACATCGACACACTCATCACTCTCTCCAGAGGAAAAGAACAGCGTGGTAT
AGAGAAGATGCCTGCCAGAGCACCTTTAGTCAGGACCACAGTGGGAGAGA
GAAAGCCAAGCAGAGGACAGGCTCCTGGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l21.b1 MSMg01no170_l21.b1 CHROMAT_FILE:
MSMg01no170_l21.b1 PHD_FILE: MSMg01no170_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:47 2005
         (319 letters)



>mm_chr2_153623174_153623891
          Length = 718

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgatattggtggctacaaatgtatccgggccttcaccgttattgatctggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgatattggtggctacaaatgtatccgggccttcaccgttattgatctggat 264

                                                                       
Query: 65  agctgtgtcatggtcatggactattggtgagtctcataggagatgggtacaggatcttgg 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 agctgtgtcatggtcatggactattggtgagtctcacaggagatgggtacaggatcttgg 324

                                                                       
Query: 125 cagccaccacatcactgggaagggggctggggccccagggaggcactaggagagctggtt 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 cagccaccacatcactgggaagggggctggggcctcagggaggcactaggagagctggtt 384

                                                                       
Query: 185 ctgagctcatcgccgtacggttcctatattgtccctccctgattctctccctgggtcttg 244
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgagctcatcaccatacggttcctatattgtccctccctgattctctccctgggtcttg 444

                                                                       
Query: 245 cagtcactctactcttgaattatgcttgctcaccccccctcccccgcccctttcttatcc 304
           ||||||||||||||||||||| |||||  ||||||||| |||||||||||||||||||||
Sbjct: 445 cagtcactctactcttgaattgtgctttttcacccccc-tcccccgcccctttcttatcc 503

                          
Query: 305 tgttatcgaccaagt 319
           |||||||||||||||
Sbjct: 504 tgttatcgaccaagt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)