BAC Information

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BAC

Clone NameMSMg01-170P14
Chromosome2 (Build37)
Map Location 74,007,345 - 74,007,570
singlet/doubletsinglet
Overlap genenone
Upstream geneGtpbp9, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170P14.T7 (MSMg01no170_p14.b1)MSMg01-170P14.TJ (MSMg01no170_p14.g1)
ACCAG367367AG367368
length717711
length of high quality
(start - end)
314 (36 - 349)226 (130 - 355)
definitionCHROMAT_FILE: MSMg01no170_p14.b1 PHD_FILE: MSMg01no170_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:04 2005CHROMAT_FILE: MSMg01no170_p14.g1 PHD_FILE: MSMg01no170_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGG
TAAGGGAGATGGCTCCATGGGTAAAAACATTTGCTATGCATGTAAGAGTG
CATGATTTCCCCAGAATCTACATAGAACTGAATGTATAGGGTAAATGTGC
TGGTTTGAATAAGAATGACCCCCTTTGAATGCTTAGTCACCAGGGAGCAG
ATCTGTTCAAAAAGATTAGGAAGACTAGGAGGTACGGCTTTGTTGGAGGA
AGTATGTCAGGACAATGAGGAACCAAACCTCTGAAACTGTAAGGCAGCTC
CAATGAACTGATTTCTATTTTCAGAGAAAAAAATTGCCTTGGTCATGTTT
TNNTTAANTTCCNNNACAGAGNCGCGNANNNAAAATCTCAGAATTCCTAT
AAAGACGTGCGTGAAAAGAAACAAGAAAATTCCCAGAAGCTCCTGGGCCA
GCTAGCATAAAACAGCAAAGGACTCTGTCTTAAACAAGGTACAAGGTGGG
GCACAACACCTATGATTATTCGCTGACCCAGACGTGTGACATGGCACATG
TGTGCCTCTATTCACGCACATGAAGGTACCCACTCCTAGATACAAAATGC
ACATACACACACATAGGCTAAATTGAACTATAAAAACAAATTCTAATATT
CCATACGAAAATCAGAAAATAATCCAATAAACCAACCGAGAACCACTACT
AGTGATACTCCTAATTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCAGAAAAATTCGTTTTGTACATTTTTTTTTCCATTCTC
ATTTTACAACATTCTTTAAGCAAGAAATAATCCCTAATATGGGGTTTTAT
GTGGGCTCTGCCTTGAAATCTCTAACCTGGATCTGTTTAAATAGGAAGGC
GCGCTTTAAAAGGAAAGGCTTCTTAGAGGCACCGGTCGCGCCTGTTTACA
TTTAAATGTAGAGGGAAAAAAATGCATCGAAGACAGAACAGCTCTGCTGA
GTCTTCCGAAGACTCTGTTTTTGTGCTCATTTGAACACTTACTCTCCACT
CTTTTTTCTACATTTCCCCCCCCCCTCACTTATTTTCCTTGTAGGTTATA
AAAATTAGTGACTATTCATGTTTAGGACATTTGACATTGTCGCCGTAGCA
ATAGTGAGAAGTGGGGGTTCTTGCTTCCAGTTAACAGCAAAGCAGGGCCA
AGTTCAGCAAGTTGTCTTACGGGGACAAGCAGAATCCTAATGAAAATACA
GGAAGTGGGTAGAATGGAGGGCCCTATCTCATGCATCATGACAGGAATCT
TGGTCCTGACTGGGATTAAAACTGAGAGTCATTAATTAGTTTTAAATCTA
TAGACATTACTAAACGGAGCAATTTTTTTTTTACAGTAAAATCTCTCTGC
TCCATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_p14.g1 MSMg01no170_p14.g1 CHROMAT_FILE:
MSMg01no170_p14.g1 PHD_FILE: MSMg01no170_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:04 2005
         (226 letters)



>mm_chr2_74007145_74007770
          Length = 626

 Score =  406 bits (210), Expect = e-118
 Identities = 222/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccctaatatggggttttatgtgggctctgccttgaaatctctaacctggatctgttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccctaatatggggttttatgtgggctctgccttgaaatctctaacctggatctgttta 260

                                                                       
Query: 61  aataggaaggcgcgctttaaaaggaaaggcttcttagaggcaccggtcgcgcctgtttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataggaaggcgcgctttaaaaggaaaggcttcttagaggcaccggtcgcgcctgtttac 320

                                                                       
Query: 121 atttaaatgtagagggaaaaaaatgcatcgaagacagaacagctctgctgagtcttccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaaatgtagagggaaaaaaatgcatcgaagacagaacagctctgctgagtcttccga 380

                                                         
Query: 181 agactctgtttttgtgctcatttgaacacttactctccactctttt 226
           |||||||||   |||||||||||||||||||||||||| |||||||
Sbjct: 381 agactctgtgggtgtgctcatttgaacacttactctcccctctttt 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)