BAC Information

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BAC

Clone NameMSMg01-171A11
Chromosome2 (Build37)
Map Location 168,059,108 - 168,059,424
singlet/doubletsinglet
Overlap genenone
Upstream genePtgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3
Downstream geneLOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A11.T7 (MSMg01no171_a11.b1)MSMg01-171A11.TJ (MSMg01no171_a11.g1)
ACCAG367403AG367404
length764734
length of high quality
(start - end)
322 (45 - 366)278 (75 - 352)
definitionCHROMAT_FILE: MSMg01no171_a11.b1 PHD_FILE: MSMg01no171_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:09 2005CHROMAT_FILE: MSMg01no171_a11.g1 PHD_FILE: MSMg01no171_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCCAGTACCAGAAAACAGTTTGGTGAGCAGGTGGGCAACCCAC
CCTGCTTCCTGAAGACAGCAAAGCGCACAGTTGCCGAAAGGGTGTTGAGA
ATAGAGGCTGATGCATTCCCCTGAAAGAACAGTCAGTGCTAAGCCACCTC
TCTGGACACAGGCCTTTGTTTCTTAAGAGAAGCAGAGACCATGGAAGCAA
CTCAAGTAGCAGTGTCTGGCAATTTTTTAGAAAAAGCATAAAAACAGCTA
GCCCTCTGCAGGCCAGAGTCACCAGTTTGCAAGCATTGAGAGGTAGGTGT
GTGTGTGTGTGTGTTTTTCTAGGCCCCCCCCCACCTTCAGCTGTGAGACA
CTTTAACTCACTGAACACCCGCACTGACCAAAATAACGGGCTGATGAGCA
GGGCTCTGGAGCAGGGGTGCTGTGACTATAACCGGGAATACCACACCTGC
ATGGTCTTGTGTCCTAGCCCTATATTTACTTTTGAAGCAGGTTCTTCTGT
GCATTCCCAGGTCGCCTTTTTATTTTCATTGGACAGTCCTTTTGTCCTCC
TTCACATGACCTCCCCTGCTATTCTTGAATGACTTTGGTCTTCTGCCATA
CTCATTTCTTTATCATTCCTTTGTACCTAATACTTCCCCTGTTTCATCCC
CTTTTCTTATTCTAGTGTCACATTCATTCTGTTTTCATTGCTTCGCTCCC
CTTTATCCTCTTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTTTGCCTCCTGGATTCAGAGG
TATTTTATGGGTCAGTCATGGCAGAGAGGGCAAGGGCAGAGTTGAGCAGT
TCACCTCATGGTGGCCCCCAAACAGAAGGAGAAACAGGCAGACTCTGAGA
AGAGGTACATCCAAGGACCCGACCCCTGTGACTACTTCCCCTAATGAGGC
CCCACCTCCTGAAGTTTCCACAACCTTCCAAAACAGCACCATCAACTGGG
GATCAAACACCCGATATGTGAGCCTTTTTCAAGGACTGTTCGTACCCAAG
TCGTATGATTTTTTGCCCTACCGNTCCCCCCAAACTCCAAGAGCTGGGTA
GATTCGGGTCCCCCCCACAAAAATAATAAAAATCTGTGTGGGCGAGGTTA
GATGACTCCATGGATAAAGTGTCTGCCCCCATAGCATGATGACCTGATTT
CTTATCTATAGAACCCACTTTTTAACGCCCGTTACCGAGCAGCGTAGTTT
CACTTCTATGATCCACTTTGGCCGTTCAAGTCCAGTGTTTCCACCTGCAT
CTTAACCAAACAGTTTGCAGTGTCACATGAAATTCTGTCGGTTTAATTTT
TTTTCTTTTTCTTCCCGTTCTCTTTCTCCTCGTCCCGCCTCGTTCTCGAC
GCCTTGTGTCTTTTTTTTCTTGTTCCTCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a11.b1 MSMg01no171_a11.b1 CHROMAT_FILE:
MSMg01no171_a11.b1 PHD_FILE: MSMg01no171_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:09 2005
         (322 letters)



>mm_chr2_168058905_168059626
          Length = 722

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctccagtaccagaaaacagtttggtgagcaggtgggcaacccaccctgctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctccagtaccagaaaacagtttggtgagcaggtgggcaacccaccctgctt 263

                                                                       
Query: 64  cctgaagacagcaaagcgcacagttgccgaaagggtgttgagaatagaggctgatgcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgaagacagcaaagcgcacagttgccgaaagggtgttgagaatagaggctgatgcatt 323

                                                                       
Query: 124 cccctgaaagaacagtcagtgctaagccacctctctggacacaggcctttgtttcttaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccctgaaagaacagtcagtgctaagccacctctctggacacaggcctttgtttcttaag 383

                                                                       
Query: 184 agaagcagagaccatggaagcaactcaagtagcagtgtctggcaattttttagaaaaagc 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaagcagagaccatggaagcagctcaagtagcagtgtctggcaattttttagaaaaagc 443

                                                                       
Query: 244 ataaaaacagctagccctctgcaggccagagtcaccagtttgcaagcattgagaggtagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaaaacagctagccctctgcaggccagagtcaccagtttgcaagcattgagaggtagg 503

                            
Query: 304 tgtgtgtgtgtgtgtgt 320
           |||||||||||||||||
Sbjct: 504 tgtgtgtgtgtgtgtgt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)