BAC Information

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BAC

Clone NameMSMg01-171N01
Chromosome2 (Build37)
Map Location 162,518,799 - 162,519,081
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171N01.T7 (MSMg01no171_n01.b1)MSMg01-171N01.TJ (MSMg01no171_n01.g1)
ACCAG367932AG367933
length780732
length of high quality
(start - end)
316 (61 - 376)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no171_n01.b1 PHD_FILE: MSMg01no171_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:07 2005CHROMAT_FILE: MSMg01no171_n01.g1 PHD_FILE: MSMg01no171_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCXXXXXXXXXXX
XXXXXXXXXXTTCAACCATGGTGGTTTGCGAAGATATAAGGAGTTATTTC
AATATTCTTGTATCTTTTGAGGCTAGCTTTGTGATTGACTAAATGGTCAA
TTTTGGAGAAGGTTCTGTGAGATGCTGAGAAGAAGTTATAATCTTTTGTG
TTTGGGTGAAATGTTCTGTAGATATCTTTTAGGTCCATTTGATTCATACC
TCTGTTAGGTTCATTATTCCTCTGTTAGGTTTTGTCTTGATGACCTGTCC
ATTTCGGAGAGTAGAATGTTGAAGTTTCCTACTATTAATGGGTTTGATGT
GTGATTTAAGCATTAGTTTTTTTTTACCCCCCCCCCCCCTTGCATTTGGA
ACATAGATGTCCAGAATGGACACGCCATCATTGTGAATTTTTCCTTTGCT
GAGTGCGAATCTTTCTTCCCCATCTCTTTCAACTAAATATGGTCGAAAGT
CTGTTTTATTATATCTCGCACTTGATTACTCCCCCTCCATCCCTAGTTTT
TTTTTCGCTTGTAATACTCTTTTCCCACCCTCCAAGTCCTATTGCTTTGG
TTTTCCTTTTTTGCCCCCCTTTTCCCCCCCTTTTCCAGCCATCTTTTCTT
TTTTTTGCCCTTTTTTTCCACCCCACGTGCCTTTTTTTCGCCATCTTTTC
TTTTCCCTTTTTTTTATTATCCTCCCTTTTTCCTCCCCCTCCCTTTTTGT
CCGTCACCTCCCTTTTTTCTTCGCCCGCTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTGCTCTCAGGCATGAGCCACAT
CCAGCAGGAAGGCCACTCTCTTACCATTTCTGCCTGGGTTCCTGAGATTT
CAGGAATCACTGGGAGGCAAGTTGAGAACCCAGAGGTCAGGAGGGAAATC
CCCTTGACTAGTCTTCCTCTACTGTACACTCTCCAAAGCAGGAAGACTGC
ATGTTACATACCTGTCACCAGCATGAAGAACCCAGGAGGAAGAGCTGACA
CTACAAAAATACAGTCATAAATACTGTTTGCTGAGCACTTACCATATGCC
GTGCCCGATGTTAAGCCCCCTCTCACCTGGGATTCTACAAACCAGATCTT
GGAACAAAGTTGTGACAGCAGGAAGTTTGTGTGTGATGTGATCCTAGGAT
GTACACTGGGAGATGAGACAGGAGAGGAAAGAAAGCACCAACAAAGGGGC
CAGTAGTCATCCCAGTGGAAAACTGGGGACCCTTTGAAGCTCTATGCTCA
CGCTGAGAATTATCCTGCAGATTGTGGGGCGAGCTGGAAGTGTACTCACC
AGCTCCCAATTCTATTGTCCGGTAATCACACCGATGATGTGGAACTTGTA
TTATGCCCCCAAGTCCTAAGAACGCTTGTTTTATAAATTTTTATTGTTGT
TTCTCCTTTTAATGACTTTTGTTATTCCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_n01.g1 MSMg01no171_n01.g1 CHROMAT_FILE:
MSMg01no171_n01.g1 PHD_FILE: MSMg01no171_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:07 2005
         (283 letters)



>mm_chr2_162518599_162519281
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgctctcaggcatgagccacatccagcaggaaggccactctcttaccatttctgcct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgctctcaggcattagccacatccagcaggaaggccactctcttaccatttctgcct 260

                                                                       
Query: 61  gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttcctgagatttcaggaatcactgggaggcaagttgagaacccagaggtcaggaggg 320

                                                                       
Query: 121 aaatccccttgactagtcttcctctactgtacactctccaaagcaggaagactgcatgtt 180
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccccttgactaggcttcctctaccgtacactctccaaagcaggaagactgcatgtt 380

                                                                       
Query: 181 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatacctgtcaccagcatgaagaacccaggaggaagagctgacactacaaaaatacagt 440

                                                      
Query: 241 cataaatactgtttgctgagcacttaccatatgccgtgcccga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaatactgtttgctgagcacttaccatatgccgtgcccga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)