BAC Information

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BAC

Clone NameMSMg01-172L09
Chromosome2 (Build37)
Map Location 115,281,377 - 115,281,659
singlet/doubletsinglet
Overlap genenone
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172L09.T7 (MSMg01no172_l09.b1)MSMg01-172L09.TJ (MSMg01no172_l09.g1)
ACCAG368540AG368541
length1,069719
length of high quality
(start - end)
---285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no172_l09.b1 PHD_FILE: MSMg01no172_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:14 2005CHROMAT_FILE: MSMg01no172_l09.g1 PHD_FILE: MSMg01no172_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAATTTTGNCTGGCCGCTAAATACGAAACTCACTATAGCGCGACGAGC
GATCCCGCGNNNGAATTCNNCTTTCTTTCGCACACGAGTAGAGGTAAGTG
GGGTAAGGAATTAATNTNNGGTCTTGNNNGTACCAAAGTAATNNGTATCT
TTCTATCCCTAAGAAGTNNATCTGCTATCGCAAGTTCCTACGATACAGTT
CTTTGGTTCCCACANTTGTGCCATNNTTGTTACATTTACTCCTATATTCT
CTCAAATCGAAAGTAATACNTTCTTGTGTGCATATTCAGTAACACTAGCT
TTTGTACTCATCTTCGACGTCCATCTCTTCTCAGTTTATTTGTCAGCGCA
TTTTCCCTCTCTCCTATTTCTTCCTCATTCTTTTCTCTTTCTCAGCCGAA
TTTAATAAAACCACCACCTCTTTTTTTTTTTTTTCAAAAAAATAAAAACA
CAAAAACCAGAAAAAAAAAAAGAAATTTTAAAGAGTAAACCCCGTAAGAA
ACAAGGAAGACCCCCTTTTTATATATTTTTTTTTTTTTTTATTTTGAGGT
TGTGTGGGGCTCCCCCCCCACCATAAAAATTAATAAAAACAAACCTCNTT
TTGGTGTGGGTGGGGGCGCGCCGTCACTTATTTCTATATTCATCCTCTCA
AATTCTCACCCCTCTTTCCATCTCGCCTCTTTTATTCTATCCTCACATCT
CCATTTTCTTCTCTATATTTCCCCTTTAACGTTTTCCTCCATATATTCTC
CCTTTTTATCACTCTACTACCCTCTTTCCTCCTCCACATTTCTACTTGTA
TTATCTTATCTTTCTCCGCCCCCCACCCTCTTCTCTTTCTCTCTCCTTCC
TACCATTATTTCTCCCTCTCGACCTTATCGTCCATTCTATTTACTCTCTT
CCTCTTCTTACGTCCATTCCATCCCACTTACTCTCTTATATTGCAACTCT
GAACAATTTTGTCTATTATCTTCTCCCCACTCCTCATTCTCTTCTTCTCC
TCGCCTCTCTCCCTCCTCTATTTTCTTTTTTCTTCACCTATTATTCCCTT
TCTCCACCTCTCTCTAATN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTTGTAGCCCACTCTTGCCTGAAGCTTA
CCTAATGAAATCTTTTTCACTCAGAGAATTAACAGTGTATCCAGCTGAAA
AGTATTTAGAATTCTCTGTGCACACTGAGCAGGCCAAGGCAGAAGAAAAC
CTTGCATACTTACTGGGGATTTTTGTTGCTTTTTCTTCAGCCTAAATTAG
GCGGCTCTTGTTCATTTAGTGCATTTGAAAGGCGCTGAACTTTTAAAATT
CTGACCTGTCGGCCCCCATTATTTCATTTGACAGCTGACACTTTGAGAGT
GCGTATTATATTTCCNGNGCGAGTNGCCTGATATGCTGCTAATAAAGGCT
ATTGTTTTTCCCCAAAGGAAAGAAATGCCCCAGATAACTATTTGCAGATC
CTGCCAGTTTGTTATGATGCAAAATGCATGTTTGGACATCACCATTTCTG
TTTATCACCTGCAGTGCATAAAATTGTCTTGGAAAAACTTGAAGAAGCGT
AAGCCCAGGTTTATCAAGAACGTCACTTTCCTTGCCTCCTCAACCTCCAG
CTTTCCATTCTCAGGTATCACACACTGAGCCTTCCTTCACTGATGCCTGG
TTGAGCTAATGTCCCAGCCCTGACGCCAGGTCTATTTCTCTTATTCCCCG
ACATTCACTCTCTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_l09.g1 MSMg01no172_l09.g1 CHROMAT_FILE:
MSMg01no172_l09.g1 PHD_FILE: MSMg01no172_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:14 2005
         (285 letters)



>mm_chr2_115281177_115281861
          Length = 685

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttgtagcccactcttgcctgaagcttacctaatgaaatctttttcactcagagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 catttgtagcccactcttgcctgaagcttacctaatgaaatctttttcactcagagaatt 424

                                                                       
Query: 61  aacagtgtatccagctgaaaagtatttagaattctctgtgcacactgagcaggccaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aacagtgtatccagctgaaaagtatttagaattctctgtgcacactgagcaggccaaggc 364

                                                                       
Query: 121 agaagaaaaccttgcatacttactggggatttttgttgctttttcttcagcctaaattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agaagaaaaccttgcatacttactggggatttttgttgctttttcttcagcctaaattag 304

                                                                       
Query: 181 gcggctcttgttcatttagtgcatttgaaaggcgctgaacttttaaaattctgacctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcggctcttgttcatttagtgcatttgaaaggcgctgaacttttaaaattctgacctgtc 244

                                                      
Query: 241 ggcccccattatttcatttgacagctgacactttgagagtgcg 283
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 243 ggcccccatcatttcatttgacagctgacactttgagagtgcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)