BAC Information

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BAC

Clone NameMSMg01-172N04
Chromosome2 (Build37)
Map Location 84,507,191 - 84,507,475
singlet/doubletsinglet
Overlap genenone
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172N04.T7 (MSMg01no172_n04.b1)MSMg01-172N04.TJ (MSMg01no172_n04.g1)
ACCAG368615AG368616
length768703
length of high quality
(start - end)
257 (64 - 320)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no172_n04.b1 PHD_FILE: MSMg01no172_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:22 2005CHROMAT_FILE: MSMg01no172_n04.g1 PHD_FILE: MSMg01no172_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGGTTTACTTTTTATGGTCACTTAAGTATACTATCATATCATCAGCA
AATAGTGATATTTTGACTTCCACCTTTCCAATTTGTATCTGATTGACCAC
CTTTTGTTGTTTCATTGCTCTAGCCAGGACTTCAAGTACTACATTGAATA
GGTAGGTAGAGAGTGGGGAGCCTTGTCTAGTACCTGATTTTAGTGGGATT
GCTGCAAGTTTCTCTACATGTAGTTTGATGTTGGCTACTGATTTGCTGTA
GATTGCTTTTATTATGTTTATGTGCGGGTCTTGAATTCCTGAACTTTCTA
AGGTTTTTATCCCGCCCCCCCGCCGAACTTTGTCAGACGCTTTTTCTGTC
TCTATTGTACCCCCCTTGTGAATTTTGTCCCTGAGCTTTTTTATACTATT
CTATCACTTTTCAGCACTATTTTCCATTTTTTTTATTCCTTCTTTCCCCT
CCTTTGCTTCCGCTAATTTCTTCACTTATTATTCTATTTTCTACTCCCTT
TCACTTCCTCTTACCTCTCTACCTTTCCTTTTAAAACTTTTCAATCTCTT
TTCGTCGATTTTGCTTACTTCTACTTTTTCCTCCTTTTCCCCCCTTTTCT
CCACCCTTTTTCCCCCTTCTCTTTTCCCTCTTCTCCACCCCTCTTTACAC
CACCCCTTATATTTTTTTTTTTAAATCCCCTATCCCCCGCTTCCACATTT
TTCATTTTTTCACCTCTT
CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCCCTACCTCCAGCTCTGTAG
AGGAGGGGCAGGTTGGAAGAGTAAAACATAGGAAGATTGTCAATGGTACC
TGCTGGGAGGTGGTATAGGAGCCTCCCCTCAGAAACACTCAAGATAGCCC
CCAGATCCTAGAACCCTCAGATGTAGAAGAGCCTTCTGGAACTCTGCTGT
CCTCAGTTAATGAGCAGGAAATACCTGCTAGAATACAACTGTGTCAGGAC
TCCCCAGAGAGCCCTAGGCTTCAAGACATTCTGCTCTCTGCTAGCCACTC
CCCAGACCACTTTGTGGTGAAGTCAGAGTTTGGGTCCAGTCCAAACCTTG
TGAGGCTGAGCAATATTGAATCACAAGTGCCGCAGCTACCAGTGAACTGG
AAGAGATTTTGGATTTTATGCTATGTGACTCAGATGTTGAGCCACCAGTA
GGTTCTTTGGAGAGTCCTGGGGCTGAAGGCTGCAGAACCCCCAAGTTATC
ACCTGGCAGAAACAGGAAAGAATTGGATTGAAGGGAAAGAATGGTGTTTG
CCAGACATGGAACTCTGGCCCAGAAACCTCACAGGATTGGAACAGGAATC
AGTTAGTGAGAACAAAGAGCCTGTTGAGCCCTTTAGTCCCCTTGTCATGG
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_n04.g1 MSMg01no172_n04.g1 CHROMAT_FILE:
MSMg01no172_n04.g1 PHD_FILE: MSMg01no172_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:22 2005
         (285 letters)



>mm_chr2_84506991_84507675
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcccctacctccagctctgtagaggaggggcaggttggaagagtaaaacataggaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agagcccctacctccagctctgtagaggaggggcaggttggaagagtaaaacttaggaag 260

                                                                       
Query: 61  attgtcaatggtacctgctgggaggtggtataggagcctcccctcagaaacactcaagat 120
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 attgtcaatggcacctgctgggaggtggtacaggagcctcccctcagaaacactcaagat 320

                                                                       
Query: 121 agcccccagatcctagaaccctcagatgtagaagagccttctggaactctgctgtcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcccccagatcctagaaccctcagatgtagaagagccttctggaactctgctgtcctca 380

                                                                       
Query: 181 gttaatgagcaggaaatacctgctagaatacaactgtgtcaggactccccagagagccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaatgagcaggaaatacctgctagaatacaactgtgtcaggactccccagagagccct 440

                                                        
Query: 241 aggcttcaagacattctgctctctgctagccactccccagaccac 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcttcaagacattctgctctctgctagccactccccagaccac 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)