BAC Information

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BAC

Clone NameMSMg01-173B10
Chromosome2 (Build37)
Map Location 12,623,831 - 12,624,137
singlet/doubletsinglet
Overlap genenone
Upstream geneIl15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B10.T7 (MSMg01no173_b10.b1)MSMg01-173B10.TJ (MSMg01no173_b10.g1)
ACCAG368802AG368803
length718723
length of high quality
(start - end)
313 (45 - 357)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no173_b10.b1 PHD_FILE: MSMg01no173_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005CHROMAT_FILE: MSMg01no173_b10.g1 PHD_FILE: MSMg01no173_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAGGATCTTTAGAGTCTATGTGGTTGCTGCTGTGCCTCAGTTTT
CTTTCACCTGTTTTTACCCCCTGAGCGAGGGCAGCCAGCTGCTGGTAATC
GAAATGAGTAACAAGAATTAACGACTGGGGTCTAATTCCCTCATAGGACT
TTAGTATTTCTTCATCCCTTTGTTTCTTTAACCATTAGGGTTTATATCAA
ACTATCTCCAGTTAGCATACAAGTTCGGCTCATGAAAATATTAAAACGTG
GTAAATTTTTCTTGGGAGATTTATGAATATGCATTGTAGGAAGCTGTTCT
TCCTTCTTTGTGTCCCCCCGCCCACCACTTCTGAGCTGGAAGGTCAAAGC
CCCGAGTTTTATTCTGGGCTAAGATCATCACTCGCTCCGTGACCTTGGCC
AAGGTGCTTAGCCACTCCACAGGCAACTGTTCCTGGGTTGATGAAGACGT
GAGTGATGGTGGCTGAGACCGCCTTCCATATAGTGAAAGCAGGAAGATTA
ATGAGATACTGTTTATAAAGCACTCTGAACTCTCGGGGAAAGAGGAGCCG
TATAAACACAGAATACAGCTATTGTCATTCAATAACATGCTTACTGTGCA
TTCCCTGTGCCTTTCTCAAAAATCGGGGATGGGTAGCGAAGTCAGCATGC
ATAGATGCTTTCCTGTAN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACACAGGGAACATGATCTGGTATTGGG
TTGGGGGGAAGTACTGAAGTCCTGAGGGCCATCAGAAAGAATGGAAAAAC
AGGCAACTTCAGGAGGTAGGAGGTTGGGAGGACCATCCAGAATATACCAG
ATACCTGGGAGATGAGTGACTCTCAGGACTCAAAGGGAGGGACCTTAGAT
GAAATGTTCTACAGAGGGGAGAGGGAACTCTTAGAGCCCACCTCCAGCAG
AAAGACAGGGCATCATGTGAGGGATGGGGTTGCCATCCTACAGTCAAAAC
TCTGTTTCATAATTCCCGGTGCCTAGCCCCANNAGAGGGATGGAAATGAA
CCTGAGGAACAGAAGGTCCAAAAAAAAAACAAAAGTGAGATCCGAGGCAA
GGCCAGGTCTCAAGGTCTGACACTATTACTGACGCTATGGAGCGCTTACA
AAAAGGTACCTATCCTGAGTGCCCTCCAAAAGACCCAACTAGTTGCTGAA
TGAGTCTGATGTAGATACTTGCACCCACCCTATAGGAAGAATTTGTTGAC
CCCTGTGCATGACTACGCGAATATTGGCCCAAGTCGATGAGCAGATTAAC
CCTTTTTGGATCCACGCTCCCCTTCTTTATCCTGGACTCCTGTAGATCTC
CCAAACTGCTGCCCCGAGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b10.b1 MSMg01no173_b10.b1 CHROMAT_FILE:
MSMg01no173_b10.b1 PHD_FILE: MSMg01no173_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:41 2005
         (313 letters)



>mm_chr2_12623627_12624338
          Length = 712

 Score =  534 bits (276), Expect = e-156
 Identities = 300/308 (97%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaggatctttagagtctatgtggttgctgctgtgcctcagttttctttcacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaggatctttagagtctatgtggttgctgctgtgcctcagttttctttcacc 264

                                                                       
Query: 65  tgtttttaccccctgagcgagggcagccagctgctggtaatcgaaatgagtaacaagaat 124
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttttacctcatgagcgagggcagccagctgctggtaatcgaaatgagtaacaagaat 324

                                                                       
Query: 125 taacgactggggtctaattccctcataggactttagtatttcttcatccctttgtttctt 184
           |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 325 taacgactggggtctaattccctcataggactttggtatttctccatgcctttgtttctt 384

                                                                       
Query: 185 taaccattagggtttatatcaaactatctccagttagcatacaagttcggctcatgaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaccattagggtttatatcaaactatctccagttagcatacaagttcggctcatgaaaa 444

                                                                       
Query: 245 tattaaaacgtggtaaatttttcttgggagatttatgaatatgcattgtaggaagctgtt 304
           ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 445 tattaaaacatggtaaatttttctggggagatttatgaatatgcat-gtaggaagctgtt 503

                   
Query: 305 cttccttc 312
           ||||||||
Sbjct: 504 cttccttc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space:   213712
Effective search space used:   213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)