BAC Information

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BAC

Clone NameMSMg01-173D05
Chromosome2 (Build37)
Map Location 56,307,143 - 56,307,449
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173D05.T7 (MSMg01no173_d05.b1)MSMg01-173D05.TJ (MSMg01no173_d05.g1)
ACCAG368877AG368878
length723723
length of high quality
(start - end)
327 (45 - 371)307 (376 - 682)
definitionCHROMAT_FILE: MSMg01no173_d05.b1 PHD_FILE: MSMg01no173_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:49 2005CHROMAT_FILE: MSMg01no173_d05.g1 PHD_FILE: MSMg01no173_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGCAACATTACAAGAAAACGTGTGCTTGCTGATTCCTAAGAAT
CAAAGGGCTGGGATCATGGGATGCTGATTCATAGGATAATCAAAAGGAAA
CCTGGAGGAAGTGACTGCATTAATATGTAAAATAAAAGACTGGGCTTATG
ATCTGCAAGCCATGAGCTATCCAAAGAATTTTTAGAATAGTTAGAGAGAA
CTGCTTGGAGAACTGGCATAAGCAGGAAAGAGAGATAGAGCTGTCTGGAG
ATCTCCAGAGAAAGCAGATAAGAGAGAAAGAAAGAGAAACAGGGAGAAAG
CAGGCTGGAAAGCTGTTTTTTTCTCACCCCCCCACCCAGCCTTGACCCAT
GATTTGAATTTGAGTTGTTTGTTTTTGATGTTCCCAGATACTCCTTCTCT
CAGAACCCCTCTTCAAGCCAAGGCTGGTTCTTGGCAATAGGGATTATTAC
CACAGCCTGAAGTTCTCCTACTCCTTTGTAGGCATGTTTCCCGAAGACGT
ATCTTCTTCCACATTTAATTTCTTTAAGGTGTTTGCTCCTTGGAGGATGC
TCACTAATGTTCAGGAATCAAGAGGTGAGGACTGAGAAATGATCATACAC
ATATTTGCAAGAAGTATAGTTTTGAGGAGTGAGAGAGACCTCATAGGTAG
ATTCTCTGACACTGGTGAGACAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAAACAGTAGGACATGGAGATGTTT
CATCTCATTAAAAGAACAAATCCATCAAAGAACCATAATATAAATACAAA
GTCGAGTGTCAGGATGGTAGCTTTAAAAGCACAATATTCAAATATGATTA
GTTTATTGCTTGAATTTTCACTATGATTTAAAAAAATTAGTGATTACTCC
CTTCAGCAACACAGTGCTGGGTCAGCGCTCTTAGATATGTCAGGAGCAAG
AGCGGCCAAGGCATGCAGCGTTTCCCCAGCCACCACGCAGCAAGCACCTT
CCAGTTAGGTTTGCGGGCAACCATCTTTAAATGCTTGAGCCGCTTTGCTT
GGCCATGACAAGATTTGCAATTCTCTACGTTTATTTACACACCATCACCC
CAACTAGACATCACATAGAAGTGGCATGGTCACAGCTGACCCCAGGGTAG
TCCCTGTCTCTGCCGATCCAATTTCATCCTGCTCTGCAATTGAACAGCAT
CCACTGAGGAGAACGCATGCACAGGACTCCGTGCCACAATAAAATTAGCA
GTAGCTTGTCACAGGGCATTTTCCTGCTTTACAGTGACAGACCCCGGACA
AATAGGTCTGCTTTCCAGAAATCCACAGAGGCCTGGCTCTCTTGAAATGT
ATATGAGCCCAGCATGCTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_d05.g1 MSMg01no173_d05.g1 CHROMAT_FILE:
MSMg01no173_d05.g1 PHD_FILE: MSMg01no173_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:50 2005
         (307 letters)



>mm_chr2_56306943_56307649
          Length = 707

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaatgcttgagccgctttgcttggccatgacaagatttgcaattctctacgtttatt 60
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tttaaatgcttgagccgctctgcttggccgtgacaagatttgcaattctctacgtttatt 260

                                                                       
Query: 61  tacacaccatcaccccaactagacatcacatagaagtggcatggtcacagctgaccccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacaccatcaccccaactagacatcacatagaagtggcatggtcacagctgaccccag 320

                                                                       
Query: 121 ggtagtccctgtctctgccgatccaatttcatcctgctctgcaattgaacagcatccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagtccctgtctctgccgatccaatttcatcctgctctgcaattgaacagcatccact 380

                                                                       
Query: 181 gaggagaacgcatgcacaggactccgtgccacaataaaattagcagtagcttgtcacagg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggagaatgcatgcacaggactccgtgccacaataaaattagcagtagcttgtcacagg 440

                                                                       
Query: 241 gcattttcctgctttacagtgacagaccccggacaaataggtctgctttccagaaatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattttcctgctttacagtgacagaccccggacaaataggtctgctttccagaaatcca 500

                  
Query: 301 cagaggc 307
           |||||||
Sbjct: 501 cagaggc 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)