CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATTACTACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGACCTGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGATTATTCCTCTCCTCGGCAGACCCCACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAGACTGAAGTGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTACAGGAGCAAAGCTTTGGGAG
TAAAACCTTAATAGATAATGCCCGGAGTCTTAGAGAAAAAACAGGGTTTG
CTCATAACCCAGTGAAAATTAATAATCTGTCACTGTTGCCCAATTCCTCA
CTATGAACAAAGCTTTGGTGTTAGGCTCATTGAGGAGAAAAGAGCCATAA
AGATCTGTTCTTCAAGCTATTTCTGAAAAATCTAAACATGATTGAAGCAC
GGTTAGCTTAATTCTTGAAATGAAGACTTTTGGACTTTTATGATAGNTTT
TTTTTCTTTTTTTCTTTTTCACTTAATGATCTGTCAAGGTAAAATGCATA
TTACATTAATCAGGAGTCTGTTCGTATAATATATTCTTAATATGCTCTCT
TCTCATTCATATTGAGAATGAGAAAAAGAAAAGGACTCATATATTATGTC
AGAACTCAATGAAACAAAGAAGCTATTGACAATGGAGATTAAGGCATCCA
TAATTGTAGAAGGCAAAGAAAATGTCGGTAGGAGATGCATCTGTAGGAGA
AGGAGCTTGGAATGGTATCTCCCCTGCAGAAATGATGCTTAGGAAGGACA
CCTGAATGGGAAGATCTGGAAGCCAGAGGCTAAACTGAAATCAACATCTG
TTTCTCAGTGCTCCCCACTATGAGAAN

Query= MSMg01no173_d11.g1 MSMg01no173_d11.g1 CHROMAT_FILE:
MSMg01no173_d11.g1 PHD_FILE: MSMg01no173_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:51 2005
         (600 letters)



>mm_chr2_107653475_107654474
          Length = 1000

 Score = 1077 bits (557), Expect = 0.0
 Identities = 586/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggagtcttagagaaaaaacagggtttgctcataacccagtgaaaattaataatctgtcac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggagtcttagagaaaaaacagggtttgctcataacccagtgaaaattaataatctgtcac 261

                                                                       
Query: 62  tgttgcccaattcctcactatgaacaaagctttggtgttaggctcattgaggagaaaaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 tgttgcccaattcctcactatgaacaaagctttggtgttaggctcattgaggagaaagga 321

                                                                       
Query: 122 gccataaagatctgttcttcaagctatttctgaaaaatctaaacatgattgaagcacggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccataaagatctgttcttcaagctatttctgaaaaatctaaacatgattgaagcacggt 381

                                                                       
Query: 182 tagcttaattcttgaaatgaagacttttggacttttatgatagnttttttttcttttttt 241
           ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||
Sbjct: 382 tagcttaattcttgaaatgaagacttttgaacttttatgatagtttttttttctttcttt 441

                                                                       
Query: 242 ctttttcacttaatgatctgtcaaggtaaaatgcatattacattaatcaggagtctgttc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctttttcacttaatgatctgtcaaggtaaaatgcatattacattaatcaggagtctgttc 501

                                                                       
Query: 302 gtataatatattcttaatatgctctcttctcattcatattgagaatgagaaaaagaaaag 361
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atataatatattcttaatatgctctcttctcattcatattgagaatgagaaaaagaaaag 561

                                                                       
Query: 362 gactcatatattatgtcagaactcaatgaaacaaagaagctattgacaatggagattaag 421
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 562 gactcatatattatgtcagaattcaatgaaacaaagaagctattgacaatggagataaag 621

                                                                       
Query: 422 gcatccataattgtagaaggcaaagaaaatgtcggtaggagatgcatctgtaggagaagg 481
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 622 gcatccataattgtagaaggcaaagaaaatgtcagtaggagatgcatctgtaggagaagg 681

                                                                       
Query: 482 agcttggaatggtatctcccctgcagaaatgatgcttaggaaggacacctgaatgggaag 541
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 agcttggaatggtaactcccctgcagaaaagatgcttaggaaggacacctgaatgggaag 741

                                                                   
Query: 542 atctggaagccagaggctaaactgaaatcaacatctgtttctcagtgctccccact 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atctggaagccagaggctaaactgaaatcaacatctgtttctcagtgctccccact 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)