BAC Information

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BAC

Clone NameMSMg01-173F11
Chromosome2 (Build37)
Map Location 116,389,962 - 116,390,275
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F11.T7 (MSMg01no173_f11.b1)MSMg01-173F11.TJ (MSMg01no173_f11.g1)
ACCAG368974AG368975
length718732
length of high quality
(start - end)
319 (45 - 363)245 (126 - 370)
definitionCHROMAT_FILE: MSMg01no173_f11.b1 PHD_FILE: MSMg01no173_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005CHROMAT_FILE: MSMg01no173_f11.g1 PHD_FILE: MSMg01no173_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAATATATAAAATGCATTGATGGCTTGGTTCTTTACAGAGTGGAT
TAATCTACTTTTGGGATTAAATTAGCATTCTTTTGTCCCTTTTGCCCAGA
TGGCTTTCAGTTGTTGATAATACACCTGAATGGGGAATAATAATAGGCAG
AGAGGTGGAGAGTTTGATTAAAATATAAATAAGTTCAAATAATTATATGC
ATTTTATGATTATGTACACCCTCCATTTCAAAGATAATAAATCAAAGGTG
TCTATAAATAAAACTTTGCATTTGAAATGACAATGTAATTCAAATATATT
TCATTGTTTACCTAAGTACCCTAGCGAGCCCTCTCTCTCTCTCTGCAATA
ACCAGAGTAAAAAAGGGAATAAAGAAGAATCAAAGAGGTAAGCGGTGTCA
GAAAAGAAAAAGTATAAATATTGCTGGATAAAGTTACAGTAGAGTCAGGG
AGTGCAAAGGTTATCACACTCAGGAAAGCTGGGCCCATAGAAATGACTGC
TGAGTCCAGAAGATATCACAGCAGAACCTGGAGACCTGTGAGCAAGGAAA
GACTCTGTTTTTACCAGTGACATGTTTTAGGAACATCAAGCAAGTTTACT
GGGGTGGCATCCATGGATTTCAGTCAGTTTCTACTCCAGTTGGTACAAAA
GAGCAGAGCTTACCCTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATC
ATGAATGGGTGTTGGATTTTGTCAAATGCTTTTTCTGCATCTAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAG
AATTTTATTAAGGATTTTTGCTTCGATATTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGCATCTTTCTGCGGTTTAGGGATCAGAGTAATA
GTGGCTTCATAAAATGAGTTGGATAGAGTACCTTCTACTTCTATCTTGTG
AAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTA
TTAATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTCTATAAGGGC
ACCTTGATCCTGATTCTACTTTGGCACCCGGTATCTGTCCAGAAATTTGT
CCATTTCATCCCCGTATTCCAGTTTTGTTGACCATATTCTTTTGCAAATT
TTTCTGATGGCGTTCTGGCACTTCCTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f11.b1 MSMg01no173_f11.b1 CHROMAT_FILE:
MSMg01no173_f11.b1 PHD_FILE: MSMg01no173_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:00 2005
         (319 letters)



>mm_chr2_116389758_116390475
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaatatataaaatgcattgatggcttggttctttacagagtggattaatctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctaaatatataaaatgcattgatggcttggttctttacagagtggattaatctac 459

                                                                       
Query: 65  ttttgggattaaattagcattcttttgtcccttttgcccagatggctttcagttgttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttgggattaaattagcattcttttgtcccttttgcccagatggctttcagttgttgat 399

                                                                       
Query: 125 aatacacctgaatggggaataataataggcagagaggtggagagtttgattaaaatataa 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 398 aatacacctgaatgggaaataataataggcagagaggtggagagtttgatt-aaatataa 340

                                                                       
Query: 185 ataagttcaaataattatatgcattttatgattatgtacaccctccatttcaaagataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ataagttcaaataattatatgcattttatgattatgtacaccctccatttcaaagataat 280

                                                                       
Query: 245 aaatcaaaggtgtctataaataaaactttgcatttgaaatgacaatgtaattcaaatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaatcaaaggtgtctataaataaaactttgcatttgaaatgacaatgtaattcaaatata 220

                          
Query: 305 tttcattgtttacct 319
           |||||||||||||||
Sbjct: 219 tttcattgtttacct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)