BAC Information

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BAC

Clone NameMSMg01-173L02
Chromosome2 (Build37)
Map Location 155,763,289 - 155,923,223
singlet/doubletdoublet
Overlap geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12
Upstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Downstream geneNfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L02.T7 (MSMg01no173_l02.b1)MSMg01-173L02.TJ (MSMg01no173_l02.g1)
ACCAG369224AG369225
length709705
length of high quality
(start - end)		316 (46 - 361)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no173_l02.b1 PHD_FILE: MSMg01no173_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005CHROMAT_FILE: MSMg01no173_l02.g1 PHD_FILE: MSMg01no173_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,922,913 - 155,923,223)(155,763,289 - 155,763,571)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAAGCAGCGTGAAGTCTCTTCCCATCAACCCTGATGATCTGTA
TGTGAGTGTGCATGGAATGCCCTTTTCTGCAATGGAAAATGATGTCAGAG
AGTTTTTCCATGGGCTCCGAGTCGATGCAGTGCATTTGTTAAAAGATCAT
GTAGGTCGAAATAATGGGAATGGATTGGTTAAGTTTCTCTCCCCTCAAGA
TACATTTGAAGCTTTGAAACGGAACAGAATGCTGATGATTCAACGCTATG
TGGAAGTCAGTCCTGCCACAGAGAGACAGTGGGTAGCTGCTGGAGGTCAT
ATCACTTTTATTTTAAGCCTCGCCCCCCTTCTGGACAAGCCCACCCTCCT
CCACAGACACTTCCAAGGTCAAAATCGCCCAGTGGGCAGAAAAGGTCAAG
ATCAAGATCACCACATGAGGCTGGCTTTTGTGTTTACTTAAAAGGGCTAC
CATTTGAAGCAGAAAACAAACATGTCATTGATTTTTTTAAGAAGTTGGAT
ATTGTGGAAGATAGTATTTATATAGCTTATGGACCCAATGGGAAAGCAAC
TGGTGAAGGCTTTGTAGAATTTAGGAATGATGCTGACTATAAGGCTGCTC
TCTGTCGTCATACACAATACATGGGCAATCGCCTTTATTCAAGTTCATCC
AATAACTAN

CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGCACGGTGTGTCCCTAAGGAGAC
ACTTTTGGGGCCAGGGAGCCAAGCCAGGGAGGTGACTCCATTGCTGGCCA
AGACAGGGGTCAGTGGATTCAGGGGCCGAGAAGAGTGGGTATAAGAATGA
GGAGGCCTAGCAGGGCGGTGGTGGTGCACGCCTTTAATCCCAGCACTTGG
GGAGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGCCTCAAAAAA
CAAACAATCTTTTTTAAGACTCGCACCCCCCCTGCAGGAGATGTGCCCCT
CTGCCACCCCTCTAGGTATCAACTTCCAATCTGGAACAAAAAAAACCAAC
CAACCAACCAAACAAACAAACAAACAAAAAAAACAAAGTCAACAGTACTC
TTAGGAGCCAAGCATACACCTTATCCTAGAAGTAGGAAGGCAGAGTCAGG
CAGATCTCTGTGACTCTGTGAAGCCAGCCTAGCCTAGTTCCAGGATAGCC
AGAGCTAACATGAGTACCACACACAAACACCTGCTATTTAAAGCTCATAC
TCATGTGTGCATGCACGTGCACACACACACACACACATATACACACACAC
TCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l02.b1 MSMg01no173_l02.b1 CHROMAT_FILE:
MSMg01no173_l02.b1 PHD_FILE: MSMg01no173_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:25 2005
         (316 letters)



>mm_chr2_155922709_155923424
          Length = 716

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaagcagcgtgaagtctcttcccatcaaccctgatgatctgtatgtgagtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctcaaagcagcgtgaagtctcttcccatcaaccctgatgatctgtatgtgagtgt 456

                                                                       
Query: 65  gcatggaatgcccttttctgcaatggaaaatgatgtcagagagtttttccatgggctccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcatggaatgcccttttctgcaatggaaaatgatgtcagagagtttttccatgggctccg 396

                                                                       
Query: 125 agtcgatgcagtgcatttgttaaaagatcatgtaggtcgaaataatgggaatggattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtcgatgcagtgcatttgttaaaagatcatgtaggtcgaaataatgggaatggattggt 336

                                                                       
Query: 185 taagtttctctcccctcaagatacatttgaagctttgaaacggaacagaatgctgatgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taagtttctctcccctcaagatacatttgaagctttgaaacggaacagaatgctgatgat 276

                                                                       
Query: 245 tcaacgctatgtggaagtcagtcctgccacagagagacagtgggtagctgctggaggtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcaacgctatgtggaagtcagtcctgccacagagagacagtgggtagctgctggaggtca 216

                      
Query: 305 tatcactttta 315
           |||||||||||
Sbjct: 215 tatcactttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no173_l02.g1 MSMg01no173_l02.g1 CHROMAT_FILE:
MSMg01no173_l02.g1 PHD_FILE: MSMg01no173_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:25 2005
         (284 letters)



>mm_chr2_155763089_155763772
          Length = 684

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcacggtgtgtccctaaggagacacttttggggccagggagccaagccagggaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcacggtgtgtccctaaggagacacttttggggccagggagccaagccagggaggtg 260

                                                                       
Query: 61  actccattgctggccaagacaggggtcagtggattcaggggccgagaagagtgggtataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccattgctggccaagacaggggtcagtggattcaggggccgagaagagtgggtataa 320

                                                                       
Query: 121 gaatgaggaggcctagcagggcggtggtggtgcacgcctttaatcccagcacttggggag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgaggaggcctagccgggcggtggtggtgcacgcctttaatcccagcacttggggag 380

                                                                       
Query: 181 cagaggcaggtggatttctgagtttgaggccagcctggtctacaaagtgagttccaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggcaggtggatttctgagtttgaggccagcctggtctacaaagtgagttccaggac 440

                                                      
Query: 241 agccagggctacacagagaaaccctgcctcaaaaaacaaacaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccagggctacacagagaaaccctgcctcaaaaaacaaacaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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