XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCATGTAAACTTTGAAAACCAGAAGGTTCGAGACAGATGTTTAACAAA
GTGAGAGGCCACATGTGCCAGGTAAGACTACCATACCCAACAAAAATATC
ACTCACAATAAGATGATGAAAGACATTACAATAAAACCAAATTTGTGCTC
CAAAGAAGGCATTAGAAGGAATTAACTTTAATCTAAAGAGACTAACCACA
CCCAAGAAGACAGTAGGAGTAAATTATCCCAGAGCAGTAGATCAAAAAAA
AGAAAAAGAACCACACTGTTATAACAAAATAACAGGAATTGTTAAGCACA
GCTCTTTGATATTTCTCAACACCCCCGCCCTCAATTTCCCAATAAAAAGA
CACAAATGCGTCTAACAAATCATACCATCAAAGACATCATCTAAAGGATG
AAGAAAGGTATTCCGAGAGAAGAGACATAAGTACCAAGGAGGTGAACCAT
TTTAATATCTGATAAAACACACAAAATTAAAATTAATCAGAAGAGATATG
GAAAGACACTTTATAATTATGAAAGGAAAAGGCCACCAAGAGGAAACTAT
AGGTATAAGCATATGTGCACCAAATACAATGGCACTCAAGTTCATAAAAG
GATACAACTATACTAATACAACTATAACGTCACTTACTTAACTCTCTCTC
CCACGGTGGTAATTCCATTTTTAATGAAATTTACCTTANGCN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACCAGATGAATGTTATT
AGTAAAGGAAGGAAGGGTGTTACAATAGTGTTTATAAGTAGTGAGAACAG
AATACTCAGAGATTCTTAACAGCAAAGCAAACAGCACTGAAAAGACCTAC
ATTAAATAAGTCATCAGAGCAGACAGAAGAGACACGCTAATGAGTTAAAT
CATGGAGGACCCTGTTCAAGAGTTTGAACTTTAGAGCAATGAAAAGGTTC
CAAATTATTTAAATCAGGGAACTATTTTAATAATATTTGCATTTTATTGA
AACTGTGTATGCTTTGTAAAGCTAATGGAGGAAAAAATTAGAAAGGGTTC
AGAACTGTTAGAAGTTCACCAATTACCACTGTCTGACAGATATTATCAAG
GATGGTGGTTAAACTTACCAACTGAATGTTACTGGGAACTATGAAATTTA
GTGAAACACATCTGGGTACAGTGTACTAACTAATGGGAAAGAAGCTGTCC
TGAATGTAGGGAGCCCCATCCTATAGCACAGGACCAGATGGAATATCAAA
GGAAGGGTTTTTTTTACATAGTATAGGCTTTGCTTTTTCTGCTTCCTGGC
AACCATGATCTGAGCTGTAATATGAAACCAGATGCTCCTGTCTTGGCTTT
TCTAGAGAACATAAATTATTTCTAG

Query= MSMg01no175_m13.g1 MSMg01no175_m13.g1 CHROMAT_FILE:
MSMg01no175_m13.g1 PHD_FILE: MSMg01no175_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:56 2005
         (639 letters)



>mm_chr2_109028420_109029458
          Length = 1039

 Score = 1137 bits (588), Expect = 0.0
 Identities = 627/640 (97%), Gaps = 1/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaccagatgaatgttat-tagtaaaggaaggaagggtgttacaatagtgtttataag 59
           |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct: 200 catgaccagatgaatgttatcttgtaaaggaaggaagggtgttagaatagtgtttataag 259

                                                                       
Query: 60  tagtgagaacagaatactcagagattcttaacagcaaagcaaacagcactgaaaagacct 119
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagtgagaacagagtattcagagattcttaacagcaaagcaaacagcactgaaaagacct 319

                                                                       
Query: 120 acattaaataagtcatcagagcagacagaagagacacgctaatgagttaaatcatggagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acattaaataagtcatcagagcagacagaagagacacgctaatgagttaaatcatggagg 379

                                                                       
Query: 180 accctgttcaagagtttgaactttagagcaatgaaaaggttccaaattatttaaatcagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accctgttcaagagtttgaactttagagcaatgaaaaggttccaaattatttaaatcagg 439

                                                                       
Query: 240 gaactattttaataatatttgcattttattgaaactgtgtatgctttgtaaagctaatgg 299
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 gaactattttaataatatttgcattttattgaaactctgtatgctttgtaaagctaatgg 499

                                                                       
Query: 300 aggaaaaaattagaaagggttcagaactgttagaagttcaccaattaccactgtctgaca 359
           |||||||||||||||||| ||||||||||||||||||| |  |||||||| |||||||||
Sbjct: 500 aggaaaaaattagaaaggattcagaactgttagaagtttaggaattaccattgtctgaca 559

                                                                       
Query: 360 gatattatcaaggatggtggttaaacttaccaactgaatgttactgggaactatgaaatt 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gatattatcaaggatgatggttaaacttaccaactgaatgttactgggaactatgaaatt 619

                                                                       
Query: 420 tagtgaaacacatctgggtacagtgtactaactaatgggaaagaagctgtcctgaatgta 479
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 tagtgaaacacatctgggtacagtgtattaactaatgggaaagaagctgtcctgaatgta 679

                                                                       
Query: 480 gggagccccatcctatagcacaggaccagatggaatatcaaaggaagggttttttttaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggagccccatcctatagcacaggaccagatggaatatcaaaggaagggttttttttaca 739

                                                                       
Query: 540 tagtataggctttgctttttctgcttcctggcaaccatgatctgagctgtaatatgaaac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tagtataggctttgctttttctgcttcctggcaaccatgatctgagctgtaatatgaaac 799

                                                   
Query: 600 cagatgctcctgtcttggcttttctagagaacataaatta 639
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagatgctcctgtcttggcttttctagagaacataaatta 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)