BAC Information

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BAC

Clone NameMSMg01-176E18
Chromosome2 (Build37)
Map Location 45,677,439 - 45,678,000
singlet/doubletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176E18.T7 (MSMg01no176_e18.b1)MSMg01-176E18.TJ (MSMg01no176_e18.g1)
ACCAG371033AG371034
length1,2581,265
length of high quality
(start - end)
641 (144 - 784)274 (135 - 408)
definitionCHROMAT_FILE: MSMg01no176_e18.b1 PHD_FILE: MSMg01no176_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:52 2005CHROMAT_FILE: MSMg01no176_e18.g1 PHD_FILE: MSMg01no176_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTTTTNNNNNNATCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTATCAGGAACTAAAACGCATTAAATGTGAATTTGATA
TTATATCATTATTTCTGATTCCTCTATATCAATCAGCTAGAGCAAATGGA
TTCAAAGAATGAGGCATCTTTTGTTTACCCAGAATTAGTTTTAAAATATT
GACCCTGGCTTTGTAGATCTTATAACTTCTTCCTTGAATTGAGCAAGATG
TTTTTATAATCTGGAAATTCTCTGAAATGTATTTCAGGTTCATTTTATTC
AGTAAAAACAAACTGTTTTCTAGTATTTTTCCTATGTTTAAATTTTTCTT
CTGTTTTAATTCATCTGTGCATTCTAATCCCTTTGGAGAAATATTAACTT
TCATTCAATAATATCTACTTATAGGTGATGTGCTTTGATTTTTTATCTTC
TTGCTTGTGTTTGGTTCTTTTAATCTCTAAAGTAATTATATAGTGGAAAG
AATCCATTTTTTAAAATACAAATATTTTATTTTAGAATTAAGATGTGACT
TTAGGTTTTTGTTTTGCTTTCTTCTTGTTTTCCTACATATTTATTTTAAA
TTGTTTACATGTATGTGTCTTGTGTCCATGCATGTGTACATAAGAGTATG
TAAATACCCAAGGAATCCAGAAGAAGGAGTCTGATACCCTAGACATGCAG
TTATAGGCAGATGTGAGCTGCCCAACATGGGCAGTGGATAATGAACCCCA
GTACCCCTGGAGAAGAGGAAACAGTTGTAATCTCTGGTGTGTCTATGGGA
CTTTCACAGGTCTATTTTTTTTTTGCATAAGCTTGCATTTTTCTGCCTGT
CCCATCAGTTTACCTAATATTGGATTCCACTACTTTTAATCCATCCTTCC
TCTACCTATCCAAGTATCTTTCCACCCATCCCATGATCCAACATATAATA
TATTTTTTTTACCTTTTTGAATAATTTAATTTATTTTGCCCCCCCCTGGT
TCCATTTTCCCAGTTTGTTCTCCAATTTCTCCCTCACTTTTATCTCCAAA
AGTAGTTCTCCCCTACAAATCCCTTCTTTTTTCTGGGGGATTACTTTTTT
TTAGGGCGTTTATAATTTTTTCTTCCTCCGTCTCAAATTATGCTTAACCT
TCTTTTAACTTTACAACACTTTTCTCTGTGTCCAATAATCCTTCTTCTAA
TTGTTTTTCTCTTGATCTCTTCCTTTCCTTTATTCTTTTTATTTTTTTAT
CTTATATT
CAGTTTTNNNNNATTCATGGNAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTTTTTCTAATGGTTTAGAG
CTTTATTTTAGAAAGCCCTAGAGAAAGGAGAGAAGGTTGAAAGAGAGAGG
CTGGCCATGGCCACGTGGAGAGAGGGGGGAAGGGAACGAGAAAAAGAGAG
CTACCAAGTAAGAAAGGTGAGAGCTTAAGCAATAAAGTGAATTCTATCTT
TGTGCCAAAATAGAATGTTTTCAATTTAATTCATTTATATCCACATTTCA
TAATTTCCAAAAAAATCCTAAGTATTACACCTCCCAAACACTTCCACATC
TATGGCTCAGAGAACATTCAGGAAAAAGAGGCAGAAAGATTATAGGAGCC
TGAAGAGCATTTTGTTGGGTGTGAGACTGTGTCTCCTAGTAATACCAGAA
GCTAAACCCATAACTGTCTCAATATAATAGCCACATAACCATCCATCTGT
ACATATAATATTTTACTAATTATTACATATTTATAATTAGATTTTTAAGA
GTATATTTTTAACAATTATTTCTATGCATTTTAATGCAAATGTTTAGCGG
ACTTCAAACTTTATAGATTTTGACCCGTTTAATTAAAATGTCTAATAATA
ACACGACTAATTGAATTTCAGTGTGCTGAAACATTTACCTTTAAAATAGT
ATAGTATTCTCTGCTTCAAAACATAATTTTATATACTTTGTATGATTTAG
CTACCATTTTTAATTTTTCTGATGTAATTTTTAATTATTTTATGACAGTG
CACCTGAAGTATGTTTGCTAGATGTCAACTCTGACGGGTATTTTTTATAT
TATAACGTCATCATATTTCCATTTTATCTATATCCTCTGTTCCATAGACA
AGACAACCATACCTTGTCCCTTGAACACTCATTTCCTTACCCATGTTCCC
TTTTTTATCAATGTGGCCGCTTTTTCCACTGTTTCATTTTCTTGTGCCTA
TCTTGTTTCTCGGGAATTCTTTTTTCTTTTTCTTTCGTCTTCTTGCTCCC
TTTTTGCCTCTTTTATCTTCCTTTTTTTTCTTCTTCCTACTTGCTTTTTT
CCCTTCCTTTATTATTCTTCTCTTATTTTCTCCTGCTCTCACTTATTTTT
TCTTTTTCTCTTCTTTTCCTTTTCTCCTTCCCTTAATCTCCACTACTTCT
CTTTTTCCTCTCTTTCCTTTATCTTTACATCTCTTCCTCTTATTTAATTC
TGCTCCTAACCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_e18.b1 MSMg01no176_e18.b1 CHROMAT_FILE:
MSMg01no176_e18.b1 PHD_FILE: MSMg01no176_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:52 2005
         (641 letters)



>mm_chr2_45677439_45678479
          Length = 1041

 Score = 1087 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatggattcaaagaatgaggcatcttttgtttacccagaattagttttaaaatattgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaatggattcaaagaatgaggcatcttttgtttacccagaattagttttaaaatattgac 503

                                                                       
Query: 61  cctggctttgtagatcttataacttcttccttgaattgagcaagatgtttttataatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctggctttgtagatcttataacttcttccttgaattgagcaagatgtttttataatctg 443

                                                                       
Query: 121 gaaattctctgaaatgtatttcaggttcattttattcagtaaaaacaaactgttttctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaaattctctgaaatgtatttcaggttcattttattcagtaaaaacaaactgttttctag 383

                                                                       
Query: 181 tatttttcctatgtttaaatttttcttctgttttaattcatctgtgcattctaatccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatttttcctatgtttaaatttttcttctgttttaattcatctgtgcattctaatccctt 323

                                                                       
Query: 241 tggagaaatattaactttcattcaataatatctacttataggtgatgtgctttgattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggagaaatattaactttcattcaataatatctacttataggtgatgtgctttgattttt 263

                                                                       
Query: 301 tatcttcttgcttgtgtttggttcttttaatctctaaagtaattatatagtggaaagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatcttcttgcttgtgtttggttcttttaatctctaaagtaattatatagtggaaagaat 203

                                                                       
Query: 361 ccattttttaaaatacaaatattttattttagaattaagatgtgactttaggtttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccattttttaaaatacaaatattttattttagaattaagatgtgactttaggtttttgtt 143

                                                                       
Query: 421 ttgctttcttcttgttttcctacatatttattttaaattgtttacatgtatgtgtcttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttgctttcttcttgttttcctacatatttattttaaattgtttacatgtatgtgtcttgt 83

                                                                       
Query: 481 gtccatgcatgtgtacataagagtatgtaaatacccaaggaatccagaagaaggagtctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gtccatgcatgtgtacataagagtatgtaaatacccaaggaatccagaagaaggagtctg 23

                                 
Query: 541 ataccctagacatgcagttata 562
           ||||||||||||||||||||||
Sbjct: 22  ataccctagacatgcagttata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)