BAC Information

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BAC

Clone NameMSMg01-176I21
Chromosome2 (Build37)
Map Location 11,600,812 - 11,601,370
singlet/doubletsinglet
Overlap geneIl2ra
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
Downstream geneIl15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176I21.T7 (MSMg01no176_i21.b1)MSMg01-176I21.TJ (MSMg01no176_i21.g1)
ACCAG371218AG371219
length1,2051,166
length of high quality
(start - end)
559 (127 - 685)291 (476 - 766)
definitionCHROMAT_FILE: MSMg01no176_i21.b1 PHD_FILE: MSMg01no176_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:27 2005CHROMAT_FILE: MSMg01no176_i21.g1 PHD_FILE: MSMg01no176_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTTTTTNNNNAGCATTGGGCGCTAAGACTCCTATGGGAGAGGTCCGCG
GAATTCCAGATTAATTCAGAACCGTATAAGACCTCTGCGGCCAAAGTTCA
GCCAAGCCTGGCCTCTTTCCAGTGCCTGAGAAGTTGCTGGGTGTCGGGGA
TCTTTAGAAGGGTTGACATGGTCGATGTGGGTCGTGCTTCAGCTGTGGTT
TAATCAAAGATCTATTTCTCTGAGATTCTCTCAGTGACTCCCCTCCTCCA
GACATTAGCTTTGTCCTTGGTCAGCTCCCCCAAGTCCTAGGCTGAATGCT
AACAATTTGTTTGTTCCTCCTCACGTGTTCAGCAGCTGTACTGAGAGGTC
CGTCCATCTGCTCCACCCAGCTGCTGCGTCTCAGCAGAGTCTCAGGGTCT
TTGTTTCATGGGTCAAATGAAAAGCACATTCCACCTGGGCTCCCGGCAAG
CAACCCCTCCGCACCTGCCGCTCCCACTGCCGGTCCACCTTCCTCTGTCT
TTCTCACCTCATCACCTATCCGACCCTTGTGGGAGTGACCACCATGTGAC
TTTTCCTGGGGAGACCTGAACCAACATCTGGTCACTAGATAGAGCAATGA
CTGCAAACTAAAGAAATGATTCCACCCAAGTATCATGTAATAAACCAATG
AATTCACTGGGCTTACTCTTGGGAGCAAGGATAGTTCAAATCCAGCTGCT
TCATCAGAAACCCCACCCCAGCTTGGATAAAAACCCTTGAAAGTCGGTTT
GCTGGAGGTCCCAGGGGGACTGGCGGACAGCCCCAACAGTTTGAGTCTCC
TTCTCTCCCGTCATTGTAACTTGTTATGTAACAGTAATAGAATAGGTGCG
TTGAGCTGCAGGAGCATCCTGTCCTCTGTGGGGTTTGTTTATTTTAATTT
TCTGAGTCCTAAAGAGCCCCTCTCCCATTCAGGAAATAGCTGGTGCATCC
CTGGGTTCCATCGCTTTCCTACATGCCCTTAATTTTCTGACGGCTTGTAA
TTCTATTCACTCTTGTTTTGTTTTTCTGCAATGCTTATATCATTCTTATT
TTCAATCCGCTGTCCTCGCTTTTACTCTCCACAAATTGTTTCTGTGTTTC
TTACAATTTTCCCTTCTAGTCTTTTTGTTTTTTGCCTTCTCCTAAACATG
TGTCTCTTCACATTTCTCTCTCTCTCCCCAATTACTTTGTGTTTGTTANC
CTCTC
NCCCATCTTTNTNNNATTGATGGNAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGTGAGGAATACCGA
ATGGCAGAGAAGCACCTGACCTTATGATCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCACAATGG
CTAAGATCAAAAATTCAGGTGACAGCAAATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACG
GGTAAGAAGGACTCATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCCAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACA
ATTTGTTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGCGGACA
CTATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACA
GAGACCAAGTTTGGAGCTGCGATGAAAGGATGGACCATGTAGAGATTGCC
ATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTTGACACCATTG
CATACACTAGCTAAGATTTTATTGAAAGGGACCCAAATGTTACCTGTCTC
TTGGTGAGAATATGCCCGGGGCCTAGCAAAACCTCGAAATTTGGATGCTC
CCCGGTCCGCTAATGGGAGGGAATCACCCGGGCCTCCCCCTCGGGAGGGA
ACCTTCATATTTATTTACCCTCCGGGAGGCTTAAAGGGAATATTTGATTC
CCCTCTCTTGGTGGGGTAAATACACCTCTTTTGTATATTAACACCCCTGG
TACCCTCCCAAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_i21.b1 MSMg01no176_i21.b1 CHROMAT_FILE:
MSMg01no176_i21.b1 PHD_FILE: MSMg01no176_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:27 2005
         (559 letters)



>mm_chr2_11600612_11601570
          Length = 959

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaagttgctgggtgtcggggatctttagaagggttgacatggtcgatgtgggtcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaagttgctgggtgtcggggatctttagaagggttgacatggtcgatgtgggtcgtg 260

                                                                       
Query: 61  cttcagctgtggtttaatcaaagatctatttctctgagattctctcagtgactcccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagctgtggtttaatcaaagatctatttctctgagattctctcagtgactcccctcc 320

                                                                       
Query: 121 tccagacattagctttgtccttggtcagctcccccaagtcctaggctgaatgctaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagacattagctttgtccttggtcagctcccccaagtcctaggctgaatgctaacaat 380

                                                                       
Query: 181 ttgtttgttcctcctcacgtgttcagcagctgtactgagaggtccgtccatctgctccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttgttcctcctcacgtgttcagcagctgtactgagaggtccgtccatctgctccac 440

                                                                       
Query: 241 ccagctgctgcgtctcagcagagtctcagggtctttgtttcatgggtcaaatgaaaagca 300
           |||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 441 ccagctgctgtgtctcagcagagtctcagggtctttgcagcatgggtcaaatgaaaagca 500

                                                                       
Query: 301 cattccacctgggctcccggcaagcaacccctccgcacctgccgctcccactgccggtcc 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 cattccacctgggctcccggcaagcatcccctccgcacctgccgctcccactgccggtcc 560

                                                                       
Query: 361 accttcctctgtctttctcacctcatcacctatccgacccttgtgggagtgaccaccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accttcctctgtctttctcacctcatcacctatccgacccttgtgggagtgaccaccatg 620

                                                                       
Query: 421 tgacttttcctggggagacctgaaccaacatctggtcactagatagagcaatgactgcaa 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacttttcctggggagacctgaacaaacatctggtcactagatagagcaatgactgcaa 680

                                                                       
Query: 481 actaaagaaatgattccacccaagtatcatgtaataaaccaatgaattcactgggcttac 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 actaaagaaatgattccacccaagtatcatgtaatgaaccaatgaattcactgggcttac 740

                              
Query: 541 tcttgggagcaaggatagt 559
           |||||||||||||||||||
Sbjct: 741 tcttgggagcaaggatagt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)