BAC Information

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BAC

Clone NameMSMg01-176M11
Chromosome2 (Build37)
Map Location 87,358,406 - 87,358,675
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439
Downstream geneOlfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176M11.T7 (MSMg01no176_m11.b1)MSMg01-176M11.TJ (MSMg01no176_m11.g1)
ACCAG371373AG371374
length1,2061,162
length of high quality
(start - end)		---272 (138 - 409)
definitionCHROMAT_FILE: MSMg01no176_m11.b1 PHD_FILE: MSMg01no176_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:57 2005CHROMAT_FILE: MSMg01no176_m11.g1 PHD_FILE: MSMg01no176_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATCTTNNNNNNGGCATTGGGCGCTAAGACTCACTATGGGAGAGGATCCG
CGGAATTCTTTATATATGTTGGATCTTATAAACCTCTCTGATTTAAGATA
GGTAAAGATCCTTTCCCTATCAGTTGTCGGTCTTTTTGACTTATTGACCG
TGTCTTTTGCCTTGCTCAATCTTTGCAATTTTATGAAGTCCCATTTGACA
ATTCTCGATCTTACAGCTCAAGGCATTGCTGTTCTATTCAGGAATTTTTC
CCCTGTGCCCATATCTTCTAGGCTTTTCCCCACTTTCTCCTCTATAATTT
TCAGTGTCTCTGGGTTTATGTGATTAAACTCTATATTTCTCACCCCCACC
ATCCACCCTCGACTCTTCCAGATCCTGCACCTCCTCCCCAATCTCCTGTC
TCCATTTTTTTGTCCCAATTGCCCAAGCCAGCTGACCTCTAAATTTCCTG
ATGTCTCCAGTCTCCTGAGGTTTAGATGAATCATCTTGTAATGAATACGG
ACCTGGATGTTCTCTGCTCTCTGTGCGTTGCTCTCCTCATATCAGCTGGT
GCATGCTTCATATTTGGGGGTCCATTGTTTGATAGATCTCCAGCGTCCAG
ATTATCTGAGACTACTGTTCCTCATATGGGATCACCCCATTCCTCTGCTT
CTTTCAACCTTCCCTTCCTCAAGAACAGGACTCATCCTGTCCTGCGCCTT
GGTTGCATGCCAATTATCTGCGTCTGATTCTTTCGCAGGCTTGTCGTGGC
TTTTGCATTTAATTCTCGACAAGATCTTTCTTGTGATACTGCATAGATTC
ACAAAAAGTTTTGCGGTCGTGAAGATTCCTCATTGTAATGTAGTCCCCTT
TTGTCCCTGTGATTGAAACTGCTTTTCCTCAAAATCCTCTCCATTTTCTT
CCTTGTACGTCTGTCCATAGATATCCTTATTTGCCAAAATTGTTAATATA
TCCTCCTAATCGTTTGTTTATGCTTCCCCGAATGAATCAATTCCTTTATT
ACCCCGGAAGTCTCGGGTTATTCATTCTTTATTCTTCATTCTTCGTGTTT
CCCTTTCCCTCATATGGATCATAACTCATTTTTTTTATTCTTTTACTCTT
GTTTATTCTCTCTCTCTTTTTTATTTTTTTTAATTTCTCCTCCATTTATC
TTTTTGTCCAATACTTATTCCTTCTAATTATTTATTTCCTCTTATCTTAA
TCTATT

CCCTCTCTTTNNNTAAGCAGGGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTACAACTCCCCANGAGGNNCN
NCNNCAANTGNAAANAGCCTTTAAATGCCCCCATGTNTCGAAAAAACAAA
AACCAAAAACCAACCAACCAAACAACAACAACAACAAATCTATTGCACCG
CCGGAAGTTTCTATCCGTGGTTCTTCGGAGAGAGATAATTTGAGGAGTGG
GCTACAGCTGGAGGACTCAGGTACCTCATCCCTCAGGTGCTACCTCATCC
CTCAGGAGTGATGGCTACGGGCACAGATGTATGTATCCCAGCACTTGGGA
GGCAGAGGCAGGCGGCTTTCTGAGTTTGAGGCCAGCCTGGTCTACAAATT
GAGTTCCTTTTTTTTCAGAGCTATACAGAGAAACCCTGTCTCGAAAAAAA
AAAAAAAACATTTTTTTTCCCCCCCCTCAAAACAACAACAACAACAACAA
AAAAACAAACTTGTTCGTGTACCCCTGGACTCGCTCAAGATTGTGTAATA
ACTTCTGTCAGTAGGTGAACCAAACATAACTTTGAAAGGGGTGAGTCCCA
TCTGGTATGGGGAATTCTGTACTCTATAAAGAATGTAGGAAAGAGAGTCA
TCTAGTCGCTCTCAGTCTCTAAGGCCTATTTATCTTTTTCCCTGTCCTGA
ACTCTGGGGTCAATAAGCACAACGAAGTTTCCAATCCCCTGAATATTAGC
TAATCTCTAATTTACTTACCTGGGACACAAATGTCAGACTTTATTAACCT
TAGAAAAGCATACCCTGCAAGAATTTCTTTTAAAAATTTCTTTGTTGTCC
TATGCACAGCTCTCATGCTTATTTGGAAAAGTCCCAGTCCCATTCTAAAA
AGGGTATCTATTAAATATTAAATATTTTCTTGGGTTTGACCTCCCTTGAA
GCCAATATCCCCGAAAAAATTTCGGGCTTGTTGCTTCCAATATTTGATTA
TCCAGGGTTCTTTCCCCTTTGGCCCTCCCCCATTAAATATTTTTACACGG
CCCTTAACCGCTTTTTTAACTATTTCTTTACTACCGTTTGCCGTTTTTTT
TTTTCTTTAAAGAAAAAAGCTTTCTTTTCTTCTTCTTTGGAACACCCCTC
CCTCACGTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_m11.g1 MSMg01no176_m11.g1 CHROMAT_FILE:
MSMg01no176_m11.g1 PHD_FILE: MSMg01no176_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:57 2005
         (272 letters)



>mm_chr2_87358206_87358877
          Length = 672

 Score =  522 bits (270), Expect = e-153
 Identities = 270/270 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgaaaaaacaaaaaccaaaaaccaaccaaccaaacaacaacaacaacaaatctattgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgaaaaaacaaaaaccaaaaaccaaccaaccaaacaacaacaacaacaaatctattgca 260

                                                                       
Query: 61  ccgccggaagtttctatccgtggttcttcggagagagataatttgaggagtgggctacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgccggaagtttctatccgtggttcttcggagagagataatttgaggagtgggctacag 320

                                                                       
Query: 121 ctggaggactcaggtacctcatccctcaggtgctacctcatccctcaggagtgatggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaggactcaggtacctcatccctcaggtgctacctcatccctcaggagtgatggcta 380

                                                                       
Query: 181 cgggcacagatgtatgtatcccagcacttgggaggcagaggcaggcggctttctgagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggcacagatgtatgtatcccagcacttgggaggcagaggcaggcggctttctgagttt 440

                                         
Query: 241 gaggccagcctggtctacaaattgagttcc 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 gaggccagcctggtctacaaattgagttcc 470



 Score =  134 bits (69), Expect = 7e-36
 Identities = 72/73 (98%)
 Strand = Plus / Plus

                                                                       
Query: 198 atcccagcacttgggaggcagaggcaggcggctttctgagtttgaggccagcctggtcta 257
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 95  atcccagcacttgggaggcagaggcaggcggctttctgagttcgaggccagcctggtcta 154

                        
Query: 258 caaattgagttcc 270
           |||||||||||||
Sbjct: 155 caaattgagttcc 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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