BAC Information

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BAC

Clone NameMSMg01-177D16
Chromosome2 (Build37)
Map Location 85,093,774 - 85,094,083
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D16.T7 (MSMg01no177_d16.b1)MSMg01-177D16.TJ (MSMg01no177_d16.g1)
ACCAG371676AG371677
length795712
length of high quality
(start - end)
314 (36 - 349)291 (57 - 347)
definitionCHROMAT_FILE: MSMg01no177_d16.b1 PHD_FILE: MSMg01no177_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:45 2005CHROMAT_FILE: MSMg01no177_d16.g1 PHD_FILE: MSMg01no177_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATA
ACTCCTCTCTGGGTGCCATAGAGTCAGCAGCTAAGCTATACGGCTACCCG
AGGAACAGAGGCAAAGATCACTGAGTATCAGTATGGAAATGGAAGCAGCA
CACAGGGCCTTAGGGGACGTCACACAGTCAAGTGGAGGGAAACGATAGGG
TTTACAGCAGTAGTTATGCAGGGTCTTACTGGCCATGGAATAGTAATAGA
GGGCTCCAGTGAATAGCATGGAGTTGGGGAATAGCAGTGTTGTCTTCATT
AGGTCAGTAGCCTAAGCAGTACATTGCAATGTGGGTAGATGTGTGTGTGT
GTGTGTGTGCCCCCCCCCCCCCCTTTTCATTCCTTTCCTCCCTTCTTTTT
TTCCCTCCCCCCCCTTTAAAAAAAAAACCTCCTTGCTGTGGTGCTCCCTC
CCTTTTCCCTTTTTCATCACATCGAAGAGAACGGCTTTTTTATTTTTTTT
CCTCGATAACCACCCGTATTATCTGACCTCCTTATCCGCCTTGTATTTTC
CTCTTCACAACATTTTTACAACCCCCTTTTAATCCCCTTTCTCATATTTT
TTACTATTTCACTCTTAATGTATTTTCGTTTTCCCATTTTTCTCCGACAC
TTTCTATATTCTCTTTTTTTTCATGATTTTTTTTTTTTCTTTTCCCTTTT
ATTTTTCTCATCTTTTTTTTTTTTTTTTTCCCTCCTGTTTAATTCACAAA
TAGATTACACGTTGTATAAATTTATACCCCATTTTTTATCAACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTATTATTTCTTCATATTCCTAAGTATTTATAGCATCACAGTG
AATTTTAATATTTATTGTGGTCTTATATTTCCCTTTTCTGCCTCCAAGCC
CTCTTACAAACTCCTCCTTGCTCTCTATCAAATTCACAGACTCCTTTTTC
TTTAGTTATTATATATACATATAATATATACAGATATACTACTAAATATA
ACTTGCACACATGTTTTTAAGACTGGCCAATTGGTGTGGATATGTTCTTC
CCTGGAAAAAAACTATTTCTCCCATGATCCGAATTTTTGTTGTTGTTTTT
GACCACCCCCCCCCGAGTAGGATTGAGGCCCATTTGGCATGTATATTGCT
CTCATCCTTGAACAACTCCTATTTAGGAAGTCATGCTGGTGATGCCTTGT
GGATATAGCTAGGAGACAGGATCTCAAAAAGAAAACCCTCCCTGACCCTC
CAACTTTTATAATCTTTCCACCCAGTCTTCTACAATGTTCCTTGAACCTT
AGATACAAGAGCGATTTAAAGATGTACCTACTAGGACTGAACTCCACAAT
TCTGCATTTTGATAGGCTGACATCCTCTGAGGAGAATACCCTCTTACTAC
CACCAGAACCTTCCTTTGATTTACGATGACCAATTAAACTTACCTGTTCC
ATATTTGTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d16.b1 MSMg01no177_d16.b1 CHROMAT_FILE:
MSMg01no177_d16.b1 PHD_FILE: MSMg01no177_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:45 2005
         (314 letters)



>mm_chr2_85093570_85094283
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatataactcctctctgggtgccatagagtcagcagctaagctatacggctaccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatataactcctctctgggtgccatagagtcagcagctaagctatacggctaccc 264

                                                                       
Query: 65  gaggaacagaggcaaagatcactgagtatcagtatggaaatggaagcagcacacagggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggaacagaggcaaagatcactgagtatcagtatggaaatggaagcagcacacagggcc 324

                                                                       
Query: 125 ttaggggacgtcacacagtcaagtggagggaaacgatagggtttacagcagtagttatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggggacgtcacacagtcaagtggagggaaacgatagggtttacagcagtagttatgc 384

                                                                       
Query: 185 agggtcttactggccatggaatagtaatagagggctccagtgaatagcatggagttgggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggtcttactggccatggaatagtaatagagggctccagtgaatagcatggagttgggg 444

                                                                       
Query: 245 aatagcagtgttgtcttcattaggtcagtagcctaagcagtacattgcaatgtgggtaga 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 aatagcagtgttgtcttcattaggtcagtagcctaagcagtacgttgcaatgtgggtaga 504

                     
Query: 305 tgtgtgtgtg 314
           ||||||||||
Sbjct: 505 tgtgtgtgtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)