BAC Information

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BAC

Clone NameMSMg01-177M03
Chromosome2 (Build37)
Map Location 72,664,927 - 72,665,524
singlet/doubletsinglet
Overlap genenone
Upstream geneItga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177M03.T7 (MSMg01no177_m03.b1)MSMg01-177M03.TJ (MSMg01no177_m03.g1)
ACCAG372051AG372052
length732726
length of high quality
(start - end)
64 (73 - 136)598 (74 - 671)
definitionCHROMAT_FILE: MSMg01no177_m03.b1 PHD_FILE: MSMg01no177_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:23 2005CHROMAT_FILE: MSMg01no177_m03.g1 PHD_FILE: MSMg01no177_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTATACGAAGAAAGACGCGGAAT
TCATCTTTCTCTCCCTAAATGAGAAGAATAATTTAAGCATGGGATAGTTT
TTTTTTTCTTCCAGTTTAATTGAAACTGTTCCTGTGAATTTCCAAACAGA
TAGGAGATTTCATGTGTATGCCATGGAAGGTTACATGTCTGTTATGGTTT
GTGTATGCTTAGCCCATGAAGTGGCACTGGTGGGAGGTGTGGCCTTGTTG
AAGAAGGTATGTCACTGTGGGCATGGGCTTTAATACCCTGTCCTACCTGC
TTGGGAAGTAGTATTCTGTCTTTATTCCTTCAGATGAAGATGTATAACTC
TCAGCTCCTCCTGCACCATGGCTGCCTGGATGCTGCCATGGTCCTGCCTT
GATAATAATGGACTAAATCTCCGAACCTGTAAGCCAACTCCAATTAAATG
TTGTCCTTATAAGAGTTGCCTTGGACATGGGGTGTCTGTTCGCAGCAGTG
AAACCCTAACTAAGACAATGTCCAAATGACTCCTCCGATCACCTCTTGAA
GAATGGTATAAAGTCACTTAATGCCAAAGGAACTAACCTGAGGAATAGAA
ACTCCCATCATCAAGCAGCCAAGGTTTGCAGAATGCAAGCAACCTTCTAA
CACTGAATGAAGCACAGGAGAGATTCCGAGGACTATTGTTTAATATTCCA
TGTTAAGAGCTTATAGACATCTTTTTTTCTTN
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTTCTAGACAGGGAAATGGAGTGT
GAGGAGCTCAGAGCAAGTCAGCAGCAGCCCCATAGCCCCAGGATTCCAGC
TAAGTGCCTGCAGAATAGAAGGCCTCTGTAGACGCATACAGAACTCCATT
GACATAGTTTTATCCGGAACATCAAGATTTGCATGGAGCAATTCTTAAAT
AAGATTTAATTACCGACTGGCTATAAGATGTGGTGGAATGAAAAAGTGAC
ATCAGGGCTTTGTTTGTACTGCCCAGGATGGCAGAGGGTGAGAAGCTGTG
GTATTTACGTCAGGAATCTGTTGTTTAGCTTTAGAAAAATCTGTAGACCT
GGAAGAGATGAAAACTAGGGACCTTTCAAAGTGTGATTGCTCACTTTCCA
ATTTCAATCTTCCAAGTAGTCTAATACTTTCCAGGACAAATAGAGTTTAC
TATGAAGTTTCTTTGCAGATGCAATTTAAAGACAAATTTCTCATGCCCTC
ATTTGTGAATGTATTGTCAACAAATCACACGCATTTATTCAACTTGTCCA
AATAAAAGCCCAATAAGGCTCAGAAATAGATTTCTCAGCAATTTGACTTT
CTGATGCAGGGAAAGCAGCACAGAGCTGGATTCATTCAGTCAAAGGAAGC
GCAGTGAGGTAATTTAGGGGCAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_m03.g1 MSMg01no177_m03.g1 CHROMAT_FILE:
MSMg01no177_m03.g1 PHD_FILE: MSMg01no177_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:23 2005
         (598 letters)



>mm_chr2_72664727_72665724
          Length = 998

 Score = 1118 bits (578), Expect = 0.0
 Identities = 593/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttctagacagggaaatggagtgtgaggagctcagagcaagtcagcagcagccccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 798 cactttctagacagggaaatggagtgtgaggagctcagagcaagtcagcagcagccccac 739

                                                                       
Query: 61  agccccaggattccagctaagtgcctgcagaatagaaggcctctgtagacgcatacagaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agccccaggattccagctaagcgcctgcagaatagaaggcctctgtagacgcatacagaa 679

                                                                       
Query: 121 ctccattgacatagttttatccggaacatcaagatttgcatggagcaattcttaaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctccattgacatagttttatccggaacatcaagatttgcatggagcaattcttaaataag 619

                                                                       
Query: 181 atttaattaccgactggctataagatgtggtggaatgaaaaagtgacatcagggctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atttaattaccgactggctataagatgtggtggaatgaaaaagtgacatcagggctttgt 559

                                                                       
Query: 241 ttgtactgcccaggatggcagagggtgagaagctgtggtatttacgtcaggaatctgttg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgtactgcccaggatggcagagggcgagaagctgtggtatttacgtcaggaatctgttg 499

                                                                       
Query: 301 tttagctttagaaaaatctgtagacctggaagagatgaaaactagggacctttcaaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttagctttagaaaaatctgtagacctggaagagatgaaaactagggacctttcaaagtg 439

                                                                       
Query: 361 tgattgctcactttccaatttcaatcttccaagtagtctaatactttccaggacaaatag 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 438 tgattgctcactttccaatttcaatcttccaagtagtctaatacttcccaggacaaatag 379

                                                                       
Query: 421 agtttactatgaagtttctttgcagatgcaatttaaagacaaatttctcatgccctcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtttactatgaagtttctttgcagatgcaatttaaagacaaatttctcatgccctcatt 319

                                                                       
Query: 481 tgtgaatgtattgtcaacaaatcacacgcatttattcaacttgtccaaataaaagcccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtgaatgtattgtcaacaaatcacacgcatttattcaacttgtccaaataaaagcccaa 259

                                                                     
Query: 541 taaggctcagaaatagatttctcagcaatttgactttctgatgcagggaaagcagcac 598
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taaggctcagaattagatttctcagcaatttgactttctgatgcagggaaagcagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)