BAC Information

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BAC

Clone NameMSMg01-177P11
Chromosome2 (Build37)
Map Location 158,307,278 - 158,453,628
singlet/doubletdoublet
Overlap geneB230339M05Rik, BC054059, LOC545481, Slc32a1, Actr5
Upstream geneBlcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, LOC628935
Downstream genePpp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177P11.T7 (MSMg01no177_p11.b1)MSMg01-177P11.TJ (MSMg01no177_p11.g1)
ACCAG372199AG372200
length711712
length of high quality
(start - end)		667 (45 - 711)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no177_p11.b1 PHD_FILE: MSMg01no177_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:38 2005CHROMAT_FILE: MSMg01no177_p11.g1 PHD_FILE: MSMg01no177_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,307,278 - 158,307,940)(158,453,069 - 158,453,628)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGCCCTCTTATGACTTCCTTGGGTACCAAGCATATATGTGATGC
ATTTACATACACGCAGCCAAACCATTTGCTTACATAAAATAAATATTTGT
ATTTTCCTGGGATTTTTGCTCATTTGTTTAGTTTTTAATGCTACCAGATT
GTTCTTTAAATTTAGACTAGGTCCTTGCTGTCTTTTAGGTGTCTCAGTAC
TCAGGATGGTGCTTTTGATTGAGTATATAATATAAATAATTCAGAAAGTA
ACATAGCTTTGAATTTATTATTCTCTAGTCGTACCTCAGTTATCCTGTAG
AGCAGGAGATAACCAACTATAGTGCACAAGACAAATTCAGCCAAGAATGA
GTTTATGACTTTAAAATTTTAGAGCATTTCTTTTTATATGTATGAATATT
TTGCTTGCAGATATGTAAGTGCTTGACATGTGTGCCTTTGGTGCCCATGA
AGGCTAGAAGAGGGCAGGGGATATCCTGGAACTGAAGTTACAGATAGTCA
TCAGCCCCCATGTGTGTGCTAGGAACCAAATCCAGGTCCTCTGCAAGAGC
AGCCATTATTCTTAGCTGCTGAGCTGTCTCTCCTGCCCCAACTTTTACAT
TTTTTTCAAGTTATAATAAAATGCAAAGAAGAGTATACTGCAAAGACCTC
TATGACCAGCN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACAAAGGGGCAGACTAGACTAG
TGGAGGGTGAGGACACCTAAAACCCTATCAGGGAGATTCCCTTGGTTCAG
CCTCTTACCCAACGCCAGAACTCCTACTGCAGACCCCGGCATGTGGCCCT
TTAGCTTCTACCGCAGAAAAGCGGTTTAGGCCAGTAGTGGCACATGTCTT
TAATCCCACCACTTGGGAGGCAGACACAGGCAGAGACCAGCCTGGTCTAT
AGAGTGAGTTCCAGGGCTATGTAAAGACCCTGTCTCAATTTAAAAAACAA
AACAAAAAACAGTTCAGTAGGATGTCTAAGTGACATGTGACAAGTGTGTT
CTTCTGGGGGCTCCTGGGAACACGTAGCCTAGAAATAATAATAATAAAAT
GGTCAAGCAGGCCAATCCCAAGGGCTCCTTGCTCTGGGCCTTAAGAGTCT
GATTTCACAAGCTTCCTGGGAACTGCTTCTCTCCACAATCAGACGAACAA
GCACATACATGCTGGCTGGTAAAGGGACCAGAGCCTCATCTTAGCAGGGC
TGCAAAGCTAAGCGTCCACGCTAGAGCCAGGGCTCGCTGCCTGCGGCACA
CAGCCCTTCTGGCAATGTGGGAACTTTTAAGGGCACAATGCTAGCTTCAT
CACACAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_p11.b1 MSMg01no177_p11.b1 CHROMAT_FILE:
MSMg01no177_p11.b1 PHD_FILE: MSMg01no177_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:38 2005
         (667 letters)



>mm_chr2_158307075_158308141
          Length = 1067

 Score = 1259 bits (651), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtgccctcttatgacttccttgggtaccaagcatatatgtgatgcatttaca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgcccttttatgacttccttgggtaccaagcatatatgtgatgcatttaca 263

                                                                       
Query: 64  tacacgcagccaaaccatttgcttacataaaataaatatttgtattttcctgggattttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacacgcagccaaaccatttgcttacataaaataaatatttgtattttcctgggattttt 323

                                                                       
Query: 124 gctcatttgtttagtttttaatgctaccagattgttctttaaatttagactaggtccttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctcatttgtttagtttttaatgctaccagattgttctttaaatttagactaggtccttg 383

                                                                       
Query: 184 ctgtcttttaggtgtctcagtactcaggatggtgcttttgattgagtatataatataaat 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 ctgtcttttaggtgtctcagtactcaggatggtgcttttgattgactatataatataaat 443

                                                                       
Query: 244 aattcagaaagtaacatagctttgaatttattattctctagtcgtacctcagttatcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattcagaaagtaacatagctttgaatttattattctctagtcgtacctcagttatcctg 503

                                                                       
Query: 304 tagagcaggagataaccaactatagtgcacaagacaaattcagccaagaatgagtttatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagagcaggagataaccaactatagtgcacaagacaaattcagccaagaatgagtttatg 563

                                                                       
Query: 364 actttaaaattttagagcatttctttttatatgtatgaatattttgcttgcagatatgta 423
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actttaaaattttagagcgtttctttttatatgtatgaatattttgcttgcagatatgta 623

                                                                       
Query: 424 agtgcttgacatgtgtgcctttggtgcccatgaaggctagaagagggcaggggatatcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtgcttgacatgtgtgcctttggtgcccatgaaggctagaagagggcaggggatatcct 683

                                                                       
Query: 484 ggaactgaagttacagatagtcatcagcccccatgtgtgtgctaggaaccaaatccaggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaactgaagttacagatagtcatcagcccccatgtgtgtgctaggaaccaaatccaggt 743

                                                                       
Query: 544 cctctgcaagagcagccattattcttagctgctgagctgtctctcctgccccaactttta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctctgcaagagcagccattattcttagctgctgagctgtctctcctgccccaactttta 803

                                                                       
Query: 604 catttttttcaagttataataaaatgcaaagaagagtatactgcaaagacctctatgacc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 catttttttcaagttataataaaatgcaaagaagagtatactgcaaagacctctatgacc 863

              
Query: 664 agc 666
           |||
Sbjct: 864 agc 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_p11.g1 MSMg01no177_p11.g1 CHROMAT_FILE:
MSMg01no177_p11.g1 PHD_FILE: MSMg01no177_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:38 2005
         (636 letters)



>mm_chr2_158452593_158453628
          Length = 1036

 Score = 1060 bits (548), Expect = 0.0
 Identities = 557/560 (99%)
 Strand = Plus / Minus

                                                                        
Query: 77   tcttacccaacgccagaactcctactgcagaccccggcatgtggccctttagcttctacc 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 tcttacccaacgccagaactcctactgcagaccccggcatgtggccctttagcttctacc 977

                                                                        
Query: 137  gcagaaaagcggtttaggccagtagtggcacatgtctttaatcccaccacttgggaggca 196
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 976  gcagaaaagcggtttaggccagtagtggcacatgcctttaatcccaccacttgggaggca 917

                                                                        
Query: 197  gacacaggcagagaccagcctggtctatagagtgagttccagggctatgtaaagaccctg 256
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  gacacaggcagaggccagcctggtctatagagtgagttccagggctatgtaaagaccctg 857

                                                                        
Query: 257  tctcaatttaaaaaacaaaacaaaaaacagttcagtaggatgtctaagtgacatgtgaca 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tctcaatttaaaaaacaaaacaaaaaacagttcagtaggatgtctaagtgacatgtgaca 797

                                                                        
Query: 317  agtgtgttcttctgggggctcctgggaacacgtagcctagaaataataataataaaatgg 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  agtgtgttcttctgggggctcctgggaacacgtagcctagaaataataataataaaatgg 737

                                                                        
Query: 377  tcaagcaggccaatcccaagggctccttgctctgggccttaagagtctgatttcacaagc 436
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 736  tcaagcaggccaatcccaagggctacttgctctgggccttaagagtctgatttcacaagc 677

                                                                        
Query: 437  ttcctgggaactgcttctctccacaatcagacgaacaagcacatacatgctggctggtaa 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  ttcctgggaactgcttctctccacaatcagacgaacaagcacatacatgctggctggtaa 617

                                                                        
Query: 497  agggaccagagcctcatcttagcagggctgcaaagctaagcgtccacgctagagccaggg 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  agggaccagagcctcatcttagcagggctgcaaagctaagcgtccacgctagagccaggg 557

                                                                        
Query: 557  ctcgctgcctgcggcacacagcccttctggcaatgtgggaacttttaagggcacaatgct 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  ctcgctgcctgcggcacacagcccttctggcaatgtgggaacttttaagggcacaatgct 497

                                
Query: 617  agcttcatcacacaagaaaa 636
            ||||||||||||||||||||
Sbjct: 496  agcttcatcacacaagaaaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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