BAC Information

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BAC

Clone NameMSMg01-178D01
Chromosome2 (Build37)
Map Location 78,837,573 - 78,837,938
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178D01.T7 (MSMg01no178_d01.b1)MSMg01-178D01.TJ (MSMg01no178_d01.g1)
ACCAG372352AG372353
length709709
length of high quality
(start - end)
423 (46 - 468)631 (77 - 707)
definitionCHROMAT_FILE: MSMg01no178_d01.b1 PHD_FILE: MSMg01no178_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:55 2005CHROMAT_FILE: MSMg01no178_d01.g1 PHD_FILE: MSMg01no178_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCATTTGGGGGTGTGATTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTCATTTTATTTTCTTAATCTTCTTGGAGAGAGTTCTTTT
AGGAACCACAGGCGTGAACATGTGACTAATTTATCTTTCACCGGACTTTA
CACCTTTTTCTTTGAGCATTTATGTTCCATTCACACCTATTACTAAACTG
CATCTTTTCCCATACCCACCCTTTTGAAAGATACACATTTTTTCCTCACC
CTCTGTTAGCTTGGCTTCACAGCTGACTTTGCATCCTGCATCCCCCACGC
CTGACTCCTCCATCCCCCACGACCCAATCCCTACATCCCCACCCCCCAGC
AAGCTCTTCAGTTTTTTTGCCTCAGACTCTCTGGCCTGTATCACTTGTTA
GCTGGCACAGTGAAACTGCTGGTCTGCCCAAGACTGTACAAAAACAATGA
CCTTTCTGTTGGAAATCGCCACTAGACATACCAGAGTAAGGAGGAATGAT
ATAGATAAGAAAAAAATTCATTTCTGGGAAGTGATGACCTCAGCTTAAGG
AGGAATATACAGACAGTAGCTTGGCCAGTGGCCATTTCAGGCTGTCTTTT
GTCACTGAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAATGACATCATAGTGGCACATT
TATCTTGAAGAGAATCAACAGCCATCTAACTGGACCTATAACCCACACAG
TGGGGAGGGAGGAACTCATGCCTGGCACTGTAAACCTAGCCAGCTAACCA
CGGCAGGAGCTATACTATACTCGGGACTGAACCTACTTTTGCCATTTTCC
TACCGATATAATCTCAGATTCTACTGTAAATACTCTTATACCCACAGAAG
GGTTCAGCTTTCACCAGTCTTCTAAGATTTTTATTCTTTTTACAAACAAA
AAAGAGAGGGGGGGGGACTATTGCAAAGGTCCACCACTGATCAAAACACA
GGATAAATGACTATGGGGAGGCCAGGCCCAGTTAATACATCTACAATGGA
ACCATAAGTCTGAGGTTCAAAGAAAGTCATGGAAGAGGGAGTAACAAGGT
TGTCAGAGCCAGAGGACCAGAATGTTCGCCGTGAGTGTCTTCTAGACTGG
GAAGCTGTGCCGATGAAATCTCAGCAATATGGTTACCTTAATAAGAGCTG
AAAATGACACTAGTTGACTTGTCGATGTAAATGGGGGAAATCTCACAAGG
CTCCACCATTAAATGAAGAGCTACAGGCACTCAATGGCTGTCAAGAGGAT
AAATCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_d01.b1 MSMg01no178_d01.b1 CHROMAT_FILE:
MSMg01no178_d01.b1 PHD_FILE: MSMg01no178_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:55 2005
         (423 letters)



>mm_chr2_78837317_78838139
          Length = 823

 Score =  592 bits (306), Expect = e-173
 Identities = 351/366 (95%)
 Strand = Plus / Plus

                                                                       
Query: 57  ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 316

                                                                       
Query: 117 tcattttattttcttaatcttcttggagagagttcttttaggaaccacaggcgtgaacat 176
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 317 tcattttattttcttaatcttcttggtgagagttcttttaggaaccacagccgtgaacat 376

                                                                       
Query: 177 gtgactaatttatctttcaccggactttacacctttttctttgagcatttatgttccatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgactaatttatctttcaccggactttacacctttttctttgagcatttatgttccatt 436

                                                                       
Query: 237 cacacctattactaaactgcatcttttcccatacccacccttttgaaagatacacatttt 296
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 437 cacacctattactaaactgcatcttttcccatacccacccttttgttagatacacatttt 496

                                                                       
Query: 297 ttcctcaccctctgttagcttggcttcacagctgactttgcatcctgcatcccccacgcc 356
           |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 497 ttcctcaccccctgttaacttggcttcacagttgactttgcatcctgcatcccccacccc 556

                                                                       
Query: 357 tgactcctccatcccccacgacccaatccctacatccccaccccccagcaagctcttcag 416
           ||||||| |||| ||||| | ||||| |||||||||||||||||||| ||||||||| ||
Sbjct: 557 tgactcccccatgccccatgccccaacccctacatccccaccccccaccaagctctttag 616

                 
Query: 417 tttttt 422
           ||||||
Sbjct: 617 tttttt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)