BAC Information

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BAC

Clone NameMSMg01-178J14
Chromosome2 (Build37)
Map Location 149,104,481 - 149,181,085
singlet/doubletdoublet
Overlap geneLOC383754, LOC100043593
Upstream geneSstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483
Downstream geneLOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178J14.T7 (MSMg01no178_j14.b1)MSMg01-178J14.TJ (MSMg01no178_j14.g1)
ACCAG372635AG372636
length726726
length of high quality
(start - end)		479 (43 - 521)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no178_j14.b1 PHD_FILE: MSMg01no178_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:26 2005CHROMAT_FILE: MSMg01no178_j14.g1 PHD_FILE: MSMg01no178_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:26 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(149,104,481 - 149,104,954)(149,180,792 - 149,181,085)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAGCTTACTTCTTTGAAATCATTTTACATCCAGCTACATTGCTGAGG
TAGTTTATCAGCTATTAGAGGTCTCTGGTGAAATTTGGGGTCATTTATGT
ATACCATCATATTATCTGCAAATGGTGATACTTTGACTTCTTCCTTTCCA
ATTTCTATCTTCTTTAAATCCTTCTGTTTTCTAATTCTGCTAGCTAGAAC
TTTGAATAGTATATTGAATTCATAAACAGAGCATGAGCAACCTTGCCTTG
TTACTGGCTTTAGTGAGATTGCTTCATGTATCCCTTCATTAACTTTTATG
CTGTTAGTTGGTTTTCAATATATTGGTTTTATTTAATTTATGCATACAGA
GATGTATGTAAAACGCAAAACAGACTCTATTTAATGATGCTAACCTAGAG
CATTTTCAAACAATACATTATGTGGTTTATTTTGTATGGTTTGAAATTTT
AATATAGGGTCATATGTTGATTAATCATTCTTTTGATGCCGTATTCTGAA
TTCTATGGTGTATTCCTGTCTTAAATCACAATTTAGCGATTTTGAACATT
CTGACTTGGAAAATTCTCCATCGTTCTAGTAAACCGATATCTTTTTTTAA
ACCTCCCTTTAATCTCACTTGTCTTAACTTTGGATTATTTTTAATAGTTT
ACCCTTTTTGATTACATTTGTTTTTT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGCACTCTAGCATTTCTAGA
TAGATAAATGATGGGCTGGGCCAACTCTAAAGCCCTGTATGTGGGCCTGG
AAGGTTGCTGAGTTGGCCACTCCATAATCTCATCAGCACACACACTACCA
GAGCCATATCTACGGTATTGCCCAGTTGAGATGTAGGCCTGATCTCCTAC
CTGCTAAAGGTGGTGAGCAAGGTCTGAGAAAGGAAACAATAGGTTGTTTT
CTCATATATAACCCTGTTTTAATCCTTATAGCTCTCACTCTCAATATATG
TCTCTCTATCTCTCCCCCACCTTGCTCACTTGCTAAATTTCCCTTTCTCT
CTCTCTTTCCTTCTTTTATCTCTATCCACCCTTTCATGTACTTCCTCCCT
ACCTTTGAAACTTTGGTGTGGGACAAGGTATCTAGAGCTCTGACTTCAAG
TGTGAATTATAACCAATTTGTCCAAGAGCAAAGTGTTTAACAGATATTGA
AGGTGATAGATCAGAAGCAGCTGCATTCTTCCTGTTGTGCCATACTATCC
TCTTAGTGCTATTAAGTACCCCCTCTCCTTGTTACTATATTTACCGGTAC
ATGCTGCCTATGATTTATAGTACTCCTGTCCGTCCATGTAGTATTTTCAT
AATGGTGATAGAGGTGTTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_j14.b1 MSMg01no178_j14.b1 CHROMAT_FILE:
MSMg01no178_j14.b1 PHD_FILE: MSMg01no178_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:26 2005
         (479 letters)



>mm_chr2_149104276_149105154
          Length = 879

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcagcttacttctttgaaatcattttacatccagctacattgctgaggtagttta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcagcttacttctttgaaatcattttacatccagctacattgctgaggtagttta 265

                                                                       
Query: 66  tcagctattagaggtctctggtgaaatttggggtcatttatgtataccatcatattatct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagctattagaggtctctggtgaaatttggggtcatttatgtataccatcatattatct 325

                                                                       
Query: 126 gcaaatggtgatactttgacttcttcctttccaatttctatcttctttaaatccttctgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcaaatggtgatactttgacttcttcctttccaatttctatcttctttaaatccttctgt 385

                                                                       
Query: 186 tttctaattctgctagctagaactttgaatagtatattgaattcataaacagagcatgag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttctaattctgctagctagaactttgaatagtatattgaattcataaacagagcatgag 445

                                                                       
Query: 246 caaccttgccttgttactggctttagtgagattgcttcatgtatcccttcattaactttt 305
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caaccttcccttgttactggctttagtgagattgcttcatgtatcccttcattaactttt 505

                                                                       
Query: 306 atgctgttagttggttttcaatatattggttttatttaatttatgcatacagagatgtat 365
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 506 atgctgttagttggttttccatatattggttttatttaatttatgtatacagagatgtat 565

                                                                       
Query: 366 gtaaaacgcaaaacagactctatttaatgatgctaacctagagcattttcaaacaataca 425
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 566 gtaaaatgcaaaacagactctatttaatgatgctaacttagagcattttcaaacaataca 625

                                                                 
Query: 426 ttatgtggtttattttgtatggtttgaaattttaatatagggtcatatgttgat 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 626 ttatgtggtttattttgtttggtttgaaattttaatatagggtcatatgttgat 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_j14.g1 MSMg01no178_j14.g1 CHROMAT_FILE:
MSMg01no178_j14.g1 PHD_FILE: MSMg01no178_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:26 2005
         (296 letters)



>mm_chr2_149180400_149181095
          Length = 696

 Score =  522 bits (270), Expect = e-153
 Identities = 288/294 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatgcactctagcatttctagatagataaatgatgggctgggccaactctaaagccc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttcatgcactccagcatttctagatagataaatgatgggctgggccaactctaaagccc 627

                                                                       
Query: 61  tgtatgtgggcctggaaggttgctgagttggccactccataatctcatcagcacacacac 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtatgtgggcctgggaggttgctgagttggccactccataatctcatcagcacacacac 567

                                                                       
Query: 121 taccagagccatatctacggtattgcccagttgagatgtaggcctgatctcctacctgct 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taccagagccatatctactgtattgcccagttgagatgtaggcctgatctcctacctgct 507

                                                                       
Query: 181 aaaggtggtgagcaaggtctgagaaaggaaacaataggttgttttctcatatataaccct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaggtggtgagcaaggtctgggaaaggaaacaataggttgttttctcatatataaccct 447

                                                                 
Query: 241 gttttaatccttatagctctcactctcaatatatgtctctctatctctccccca 294
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 gctttaatccttatagctctcactctcaatatatgtctctctatttctccccca 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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