CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGAGTTTACCAATCGTCACTTACTTAACATGGGCCTTAAACA
GTGGAGATCATCTGAGAGACAGCTCCAGGGGACCCAACTCTGCTAACCCC
AAACCATGCTGGCCCAGCTTTCATCATGACCTAACCTCCCCTCAGCTCCA
CACCCTGCACCTCCTTCCAGGAGGGGTGAAGCTTGCCCTCTCTGTAATCC
ATGGATACCAGAAGAGACATTGCCCTACTGAGCATGGCAGGATGGATTAA
TTGAGGAGTGTTTCATCAGCTTCTACAGCTGCCGGCAAGCTCCCGAATGG
GAAGAAATCTCCAGGAGACATGTACCCTGTGTGTGTTCAGAGAATGAGCA
TTCTGTATCCCTCTGAAACGCAGAAGCTGAGGTGCAGAGAAACCAGAGGT
ACCTTCTCTGTCTCCGGTGCGCTCTGGGAGTTGATGGCCTTTAAGAATGA
CCATGAAAGGCCCTCTTGTTCCTCCATAGACAGCTGGCTCCCATGTCTGG
ATGGTGAACCTTTAATGGGACTTTTCTCTTCCTAGGGCTCCAAGTTCTGT
CCTCACAGGAGACCTTGGACACCCTGGTACCTGGCACCCTCCACAGGCAC
ACTTTTTCTGCATTTGCAGCTTCCAAGGTCTGGGCTGGTGTCGGTCTGCA
TATTCTTAATCAAAGCGAGCTTN

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGACATTNTAG
GNGNNTTTGGNNAAAACCCACACCCCCTTTTTAAAAAATTTTTTTAAAAC
AAGTCCCCCACAATAACAACCAAAGGGCCCGGTTGGGCCCTTTTCTTCCT
ATAAAAATTTATTTTTTACCCTCCCCTCCCCATTACCCCCGCTGGGGGTG
GGTGGCGTNNNCCCCCCCCGGAGGAAATAATTTCCAAATTCCCAAGCCCC
CGATTTTTGGGTTTTTTCCTTTTCCAAACCCTTTCCCAAGAGCCCTTTGG
TGGTTTCCCCCCCCCCCACCCCAAGGGACAACCTTTTGGGGGCCAAAAGA
CCCCCCCTTTGGGTGCCCCGCGGGAACCCCCTTTGTGGGGGTGCGGCGGG
GTTTTAAAAAAAAAAAAACCCGGGTTTCTCCCCCTTGGGGGCCCCTCTTT
TTTTTAAAAAAAATATAAAAAATTTTTTTCCCCCCCCCCAACATAATTTT
TTTTGTGTGTTGGGGGGTGCTTTACATACACGTCTAAAAAAAAAACGTGG
TGGTAAAAAATTCTTTGGGGTTTTGTTTTTTTCCACCAAAAAAAAAATAT
ACATTCTTTCTTTCCTCCCCCCCCCACAAAAAAAACCATTCTTTCCCCCA
CCTTAAGTTGTGTGTTGGTTTTTTTTTCTCTCCCCCCCCCCCCCCCTCTT
AAAAAAAGAGGGGCGCGCCGCGGGGGAACCTCCTTCTTTTTTTTTTGGTG
GGGCGCCCCCCCCCCCCCCCCAACGATATAGAGATATATTACCCCCCCAC
CCCACCCCC

Query= MSMg01no178_m24.b1 MSMg01no178_m24.b1 CHROMAT_FILE:
MSMg01no178_m24.b1 PHD_FILE: MSMg01no178_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:41 2005
         (565 letters)



>mm_chr2_178412222_178413181
          Length = 960

 Score =  897 bits (464), Expect = 0.0
 Identities = 508/530 (95%), Gaps = 13/530 (2%)
 Strand = Plus / Minus

                                                                       
Query: 44  ggccttaaacagtggagatcatctgagagacagctccaggggacccaactctgctaaccc 103
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 960 ggccttaaacagtggagatcatctgagagtcagctccaggggacccaactctgctaaccc 901

                                                                       
Query: 104 caaaccatgctggcccagctttcatcatgacctaacctcccctcagctccacaccctgca 163
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 900 caaaccatgctggcccagctttcatcatgacctaacctcacctcagctccacaccctgca 841

                                                                       
Query: 164 cctccttccaggaggggtgaagcttgccctctctgtaatccatggataccagaagagaca 223
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 840 cctccttccaggaggggtgaagcttgccctctctgtaatttatggataccagaagagaca 781

                                                                       
Query: 224 ttgccctactga--------gcatggcaggatggattaattgaggagtgtttcatcagct 275
           ||||| ||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttgccttactgagcaggagtgcatggcaggatggattaattgaggagtgtttcatcagct 721

                                                                       
Query: 276 tctacagctgccggcaagctcccgaatgggaagaaatctccaggagacatgtaccctgtg 335
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 720 tctacagctgccggcaagctcccgaatgggaagaaatctccaggagatatgtaccctgtg 661

                                                                       
Query: 336 tgtgttcagagaatgagcattctgtatccctctgaaacgcagaagctgaggtgcagagaa 395
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 660 tgtgttcagagaatgagcattctgtatccctctgaaaggcagaagctgaggtgcagagaa 601

                                                                       
Query: 396 accagaggtaccttctctgtctccggtgcgctctgggagttgatggcctttaagaatgac 455
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 600 accagaggtaccttctctgtctccggtgtgctctgggagttgatggtctttaagaatgac 541

                                                                       
Query: 456 catgaaaggccctcttgttcctccatagacagctggctcccatgtctggatggtgaacct 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 catgaaaggccctcttgttcctccatagacagctggctcccatgtctggatggtgaacct 481

                                                             
Query: 516 ttaatgggacttttctcttcctagggctccaagttctgtcctcacaggag 565
           ||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 480 ttaatgggactt-----ttcctagggctccaagttctgtcctcacaggag 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 960
Length adjustment: 10
Effective length of query: 555
Effective length of database: 950
Effective search space:   527250
Effective search space used:   527250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)