Query= MSMg01no179_d02.b1 MSMg01no179_d02.b1 CHROMAT_FILE:
MSMg01no179_d02.b1 PHD_FILE: MSMg01no179_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:09 2005
(689 letters)
>mm_chr2_144775846_144776932
Length = 1087
Score = 1183 bits (612), Expect = 0.0
Identities = 667/688 (96%), Gaps = 6/688 (0%)
Strand = Plus / Minus
Query: 5 gaattcat----tatttaccaacaaggatgtttcttggtataaacaagaaaatgtaaaat 60
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcatgaactatttaccaaaaaggatgtttcttggtataaacaagaaaatgtaaaat 839
Query: 61 aattaaattcatataaattctgtgccctataaaatataaattctaacagtagaaattaac 120
|||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct: 838 aattcaattcatataaattctatgccctataaaatataaactctaacagtggaaattaac 779
Query: 121 taaaaaataataactaaaggacatcttgaaattatttatatttttggatgctgaataagc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 778 taaaaaataataactaaaggacatcttgaaattatctatatttttggatgctgaataagc 719
Query: 181 aataatttgaaaaaatgggttggagaaaaaaaagaaatggataaagtaaaaattaaaaag 240
|||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 718 aataatttgaaaaactgggttggag--aaaaaagaaatggataaagtaaaaactaaaaag 661
Query: 241 caggagaagaggaaggttaaagagagagatggaaaagggaaatatgagtgaaagaacagg 300
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 660 cagaagaagaggaaggttaaagagagagatggaaaagggaaagatgagtgaaagaacagg 601
Query: 301 gatgatctgaaatatctcttatttggataatagacttgaacaactttctggtttcagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gatgatctgaaatatctcttatttggataatagacttgaacaactttctggtttcagaat 541
Query: 361 atctaaatatggtcaaattagagtctattgagacaaacagatatgagtgttctgattaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atctaaatatggtcaaattagagtctattgagacaaacagatatgagtgttctgattaca 481
Query: 421 attctatcccaaacactgtataaattgggcaatcttggtacttaagctgggaacctttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attctatcccaaacactgtataaattgggcaatcttggtacttaagctgggaacctttac 421
Query: 481 ttcttatggttcaaaatagtgtttgaaaggaagaagttcgacatagttagatttgctcag 540
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 420 ttcttatggttcaaaacagtgtttgaaaggaagaagttctacatagttagatttgctcag 361
Query: 541 tcaatctctggtctagccaacctgatggacaggctcttgagcgcaaactccctcactgac 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcaatctctggtctagccagcctgatggacaggctcttgagcgcaaactccctcactgac 301
Query: 601 aattctcacctcaagtgaataccacctgagcttcgctttcctgaaggatcatctatagca 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 300 aattctcacctcaagtgaataccacctgagcttcgctttcctgaaggaccatctacagca 241
Query: 661 atgcaggacccttcaaagccaagagcag 688
||||||||||||||||||||||||||||
Sbjct: 240 atgcaggacccttcaaagccaagagcag 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1087
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1077
Effective search space: 731283
Effective search space used: 731283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_d02.g1 MSMg01no179_d02.g1 CHROMAT_FILE:
MSMg01no179_d02.g1 PHD_FILE: MSMg01no179_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:09 2005
(658 letters)
>mm_chr2_144705954_144707011
Length = 1058
Score = 1149 bits (594), Expect = 0.0
Identities = 644/661 (97%), Gaps = 4/661 (0%)
Strand = Plus / Plus
Query: 1 tgtacttttttggctaatatccacttattagtaagtacatatcatgcagatccttttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtacttttttggctaatatccacttattagtaagtacatatcatgcagatccttttggg 258
Query: 61 tctgagttacctcacttaagatgatattttctagtttcatcaatttgtatgcaaactcat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctgagttacctcatttaagatgatattttctagtttcatcaatttgtatgcaaactcat 318
Query: 121 ggtgtcctctttcttaatagctgagtagtattccactgtttaaatgaatcatattttctg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 ggtgtcctctttcttaatagctgagtagtattccactgtttaaatgaaccatattttctg 378
Query: 181 tatccattcttccattgtgggacatctga-ttgtttccaacttctggctatcacaaataa 239
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 379 tatccattcttccattgtgggacatctgggttgtttccaacttctggctatcacaaataa 438
Query: 240 ggctgctatgaacagagtggaacatgtgcccctgggtatgatggagcatcttttgggtat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggctgctatgaacagagtggaacatgtgcccctgggtatgatggagcatcttttgggtat 498
Query: 300 atatatatgctcaagaatggt-ttagctgggtcttcaggtagatctatttccaatcttct 358
|||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct: 499 atatatatgcccaagagtggtatt-gctgggtcttcaggtagatctatttccaatcttct 557
Query: 359 gaagaacctccagattgatttccaga-tggttgtaccactttgcaatcccaccagcaatg 417
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 gaagaacctccagattggtttccagagtggttgtaccactttgcaatcccaccagcaatg 617
Query: 418 gaggagtgttccactttttccacatcctctccaacatgtgctgcacctgagttttttatc 477
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 618 gaggagtgttccacttttcccacatcctctccaacatgtgctgcacctgagtttttgatc 677
Query: 478 ttagccattctgattggtgtaaggtgaaatattagagtcgttttcaaggatcaatgtttc 537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 ttagccattctgattggtgtaaggtgaaatattagagtcattttcaaggatcaatgtttc 737
Query: 538 actgaaggtgctgtgacacactgaagcaagatcaacaataataagaggttttcctactca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actgaaggtgctgtgacacactgaagcaagatcaacaataataagaggttttcctactca 797
Query: 598 cagcaggaacatgacaaaggttttctgtcttatacttactgtancatatttctaagtcca 657
|||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct: 798 aagcaggaacatgacaaaggtgttctctcttatacttactgtaacatatttctaagtcca 857
Query: 658 a 658
|
Sbjct: 858 a 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
