BAC Information

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BAC

Clone NameMSMg01-179F15
Chromosome2 (Build37)
Map Location 111,343,303 - 111,343,597
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096
Downstream geneOlfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179F15.T7 (MSMg01no179_f15.b1)MSMg01-179F15.TJ (MSMg01no179_f15.g1)
ACCAG373161AG373162
length758723
length of high quality
(start - end)
295 (61 - 355)465 (66 - 530)
definitionCHROMAT_FILE: MSMg01no179_f15.b1 PHD_FILE: MSMg01no179_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005CHROMAT_FILE: MSMg01no179_f15.g1 PHD_FILE: MSMg01no179_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCAGA
GAGATAGCAGATGATAACAATTGAAAATCCTATGTATCTCTACCTTAGCA
GTAGACTTGCAGAAATGAAATGAATAATTCTTTTTATAATATCAAGATCT
CAGGATCATCTTTAACAGAACTATGCCATGAAAATTATATAACACTACTG
AGAACATTATGTAAAATATAATAAAAACAGAAAAATACAATTTTATATAT
TATAATGCTCAGTAGATGATTAGAAGTTTGAGTTAGTAGATTTTATTCTT
CATGTCCTTGATTTAGTCCTCTCTGATTTGTTGTATGTTGTTCTGTTGCC
ATCTTTTATCCACTTGCAACTTCTCTGTGCCTAGATTTTCTGCATTATAT
TCCATTACCACCCCATCTATGATATAAATTGTTATGAGCATTTCTTTTCT
GGTGTTATGTTCCTCTCTCTCTCTCTCCCTCTCATTACCTCTTTATCTAT
CTCTCAAACTATCTATCTCTTTCCTTTCCCTTCCGTACCTTATATCACTT
GCATTCCTCTTGCCTACCCTTTATCTTTTTATACCCGTCTCGTTTATATT
TGTTACCTCTCAAACATTTGTCAATTCACCAATTCTATCCTTAGTCTCCA
AATATTCTTCCCCTAATATCATCTACTTAATTTCCCCCCCATTTCTTTTT
CCACACATTTCCTCTTCTTTCCCAACTCTTATTATACACATCTCTCACCC
CTTCATTC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGT
TGGATTTTTCAACCGCTTTCTCCACATCTAACGAAATGATCATGTGGTTT
TTTTCTTTGAGTTTGTTTATATAGTGAATTACGTTGATGAATTTCCATAT
ATTAAATTATCCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGAA
TGATTGTTTTCATGTGTTCTTGGATTCGGTTAACAAGAATGTTATTGAGT
ATTTTTGCATCGATATTCATAAAGGAAATTCGTCTGAAGTTTTCTATCTT
TGTTGGGTCTTTCTGTGGTTTAGGTATCACAGTAATTGTGGCTTCATAAA
ATAAGTTAGGTAGAGTACCTTCTGCTTTTATTTTGTGGAATAATTTGTGA
CGAACTGCAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAA
CCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATCAATGACTGCTT
CTATTTCTTTAGGGGCATAGGACCCTATAGCTCATTATCCTGACCCTGAT
TTATCTTTGTTATGTGGTATCTGTCTAGAAACTTGTCCATTTCATCTTAG
TTCCCCCCGTTTGTTGTACATACTTTCTTATTTAATATTCTGATGCCGTC
TCCACTTTCTTCTTTACCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_f15.b1 MSMg01no179_f15.b1 CHROMAT_FILE:
MSMg01no179_f15.b1 PHD_FILE: MSMg01no179_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:20 2005
         (295 letters)



>mm_chr2_111343247_111343941
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgataacaattgaaaatcctatgtatctctaccttagcagtagacttgcagaaatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgataacaattgaaaatcctatgtatctctaccttagcagtagacttgcagaaatgaaa 292

                                                                       
Query: 61  tgaataattctttttataatatcaagatctcaggatcatctttaacagaactatgccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgaataattctttttataatatcaagatctcaggatcatctttaacagaactatgccatg 232

                                                                       
Query: 121 aaaattatataacactactgagaacattatgtaaaatataataaaaacagaaaaatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaaattatataacactactgagaacattatgtaaaatataataaaaacagaaaaatacaa 172

                                                                       
Query: 181 ttttatatattataatgctcagtagatgattagaagtttgagttagtagattttattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttttatatattataatgctcagtagatgattagaagtttgagttagtagattttattctt 112

                                                                  
Query: 241 catgtccttgatttagtcctctctgatttgttgtatgttgttctgttgccatctt 295
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 catatccttgatttagtcctctctgatttgttgtatgttgttctgttgccatctt 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)