Query= MSMg01no181_g11.b1 MSMg01no181_g11.b1 CHROMAT_FILE:
MSMg01no181_g11.b1 PHD_FILE: MSMg01no181_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:51 2005
(490 letters)
>mm_chr2_82303559_82304447
Length = 889
Score = 847 bits (438), Expect = 0.0
Identities = 475/490 (96%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 5 gaattct----ggggggtgcgtacccccacctcctatttccagaggttgcctgtttcctt 60
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattctggggggggggt--gtacccccacctcctatttccagaggttgcctgtttcctt 827
Query: 61 tctttctgctaggtttcagggctttttccctcacccaatgccagatcaggttccctttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tctttctgctaggtttcagggctttttccctcacccaatgccagatcaggttccctttcc 767
Query: 121 cccctccttctcctctgaagtccactttccctcccaggtcccttcctctctccccacttg 180
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 766 cccctccttcccctctgaagtccactttccctcccaggtccctccctctctccccacttg 707
Query: 181 tgattgctttcatctctctcccaagtgggactgaggcatcatcacttgggcacttatcta 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 706 tgattgctttcatctctctcccaagtgggactgaggcatcctcacttgggcacttatcta 647
Query: 241 tctttaggacaaggtaaatgcgaagacagttattatttctgtctaatatcagacagttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tctttaggacaaggtaaatgcgaagacagttattatttctgtctaatatcagacagttat 587
Query: 301 ttggctcaagaacatttggctaagttagaatattattttcttccagaaatcccccaccat 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 586 ttggctcaagaacatttggctaagttagtttattattttcttccagaaatcccc-accat 528
Query: 361 cacaacaatatggctttccacaatatgtgtttgcttggtaataaatgaggttggttcctt 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cacaacaatatgattttccacaatatgtgtttgcttggtaataaatgaggttggttcctt 468
Query: 421 agaatttgctatcaaggatatctctattttctttttttattggtcattttatttatttgc 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 agaatttgctatcaaggatatctctattttctttttttattggttattttatttatttgc 408
Query: 481 atttcaaatg 490
||||||||||
Sbjct: 407 atttcaaatg 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space: 421920
Effective search space used: 421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_g11.g1 MSMg01no181_g11.g1 CHROMAT_FILE:
MSMg01no181_g11.g1 PHD_FILE: MSMg01no181_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:51 2005
(450 letters)
>mm_chr2_82226990_82227839
Length = 850
Score = 824 bits (426), Expect = 0.0
Identities = 445/452 (98%), Gaps = 2/452 (0%)
Strand = Plus / Plus
Query: 1 tgaactcaaacatgattgtttccgttgacagttggtttctgctgcatgattttaagcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaactcaaacatgattgtttccgttgacagttggtttctgctgcatgattttaagcccc 260
Query: 61 aatttaatgatgttctcttatttggaagcctcatttggtgaggcactctgctcctccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttaatgatgttctcttatttggaagcctcatttggtgaggcactctgctcctccaag 320
Query: 121 aattcagtgggaaactccatctgacttgcttttcagtgctgccttcccgacttagtttct 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aattcagtgggaaactccatctgactcgcttttcagtgctgccttcccgacttagtttct 380
Query: 181 gctgcaagtttgcacactggatttgatgaaacattggtcgccgctgcttctctttatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgcaagtttgcacactggatttgatgaaacattggtcgccgctgcttctctttatgtg 440
Query: 241 ctattctcaattgattcttttacttttatagtcatttatttaatacatcattcagtgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctattctcaattgattcttttacttttatagtcatttatttaatacatcattcagtgaaa 500
Query: 301 actgaaagcagacctgttgtagatcattctgtgaactattgaaaatatgtgatggttaat 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 actgaaagcagacctgttgtagatcattctctgaactattgaaaatatgtgatggttaat 560
Query: 361 tatctgttttcatcctgactgaattaaggaatatctaaggctttgctgaaagttatctgc 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctgttttcatcctgactgaattaaggaatatctaaggctttgctgaaagttatctgc 620
Query: 421 gtgtgcaagtgggtgtgagagagag--gggag 450
|||||||||||||| ||||||||| |||||
Sbjct: 621 ctgtgcaagtgggtgagagagagagaggggag 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
