BAC Information

Click to search

BAC

Clone NameMSMg01-181N11
Chromosome2 (Build37)
Map Location 84,694,858 - 84,695,300
singlet/doubletsinglet
Overlap geneSlc43a1
Upstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10
Downstream geneRtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181N11.T7 (MSMg01no181_n11.b1)MSMg01-181N11.TJ (MSMg01no181_n11.g1)
ACCAG374898AG374899
length745764
length of high quality
(start - end)
442 (65 - 506)191 (128 - 318)
definitionCHROMAT_FILE: MSMg01no181_n11.b1 PHD_FILE: MSMg01no181_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:24 2005CHROMAT_FILE: MSMg01no181_n11.g1 PHD_FILE: MSMg01no181_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTTTTGTCACATGGCCTCAGATTCCCCAGCTCTGCTTTTGCACCTGAG
CCACCTGTTTGCAGATATTCCTTTTTAACTCATTGAGCAAGCACATACTA
GGTGGTCAACATGTACTTGTTACTATTAATGGTAGTATTCTCTTTGGAGA
TGGTGTCAGAGTAGGAGACACCACCACCACTCCTGAAATAGTGGTAAATG
TTACATGGACCAAAAGAGGAGGCTGCCAAGAAATTTAGCGTACTGGTTTT
GGTTGGCGGTGGGGTGGGGAAGTCAACCTGATTGACAGCTTTCCCCAGCC
CCTTTTCAATTCAGCAGCAGCCGGAGGTGGTTCTGCACAGCCTAGCACAT
ATGTATGGTAATAGTCAAATAGCTGGCATTCATTGAGTAACTACTGTATG
TACTTACTGCCAAATAGCTGTATGATATAGATGCTATTACCAACTCTGCT
AATGACAAGGAGACTTGATAAATGTCCTAGCCCTGAAGAGGTGAGTTGAA
GCCTGGAGGTGACCAGTTTGAGCCAGTGTCTGCAGTTGCTATGGCTTTTC
TTTCATGAAAATATACCATTAATACCCTTCTGCCCTTTCATTTATTGCGT
ATCTTGTATATGCTTTTTTCTTAAGTTAGGCTCTCGAACATAAAAATGTC
GGCCACTATCAAGGGACCTTATATCCTTTAATTGATAACCGCCTG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCCGCGAAATTCCCCTTGCAGATCGCTTGCAGCGTGTC
CCAGAGGTTTTGTGTTTTGTCGTCGATTTCCTCTTAATTTAGCACCAGAA
AGTTTTTTCTCTTGATTTCTTATTTGACCCATTCATCATTCAATAATAAG
CTGTTTAATCTCCTCAAGTTTGCATGTTTATTGAAGGACTATTTGTTGTT
AATTTTAAGTTTTTTGTGTACTGTGACCAGAATACAGAGAATTTTTTTTA
ATTTATAAAGATTTGTTTTGTGTTTTAGGCTGTGGTCTGTTTTAGAAAAG
CTTCTATGTTTTTTTGACCACACCGCTCATTCTTTAAAAGTTTGAGTAGA
ATATTCTTTTTTTCCACCACAAAAAAAAAAAAATTTTTTGTTTTCTCGAC
AATTTTTTTCTCCGCATAGTTCCGACCGCCCTTGTATTTAACTCTGTTTA
CCCGCCTGCCCTCCATTTTTTATACCCTCCCTTTTTTTTTTTTCCCACTT
TTTACATTTTTTGCGTGTTTACACCCCACGCCTTTTTTTTTTTCCCCCTA
CCCCCCCCCTCATTTGTTCACTTTTATCTTGTATTAATAAGTCCATTATA
ACCCTGATTTTTTTTTTTTATAATTTATTTTTTTACTACCCCCCTATTTT
TCATTTGCCCTTCCTTTCCCCCCCTATTAACGTATTTTTTTCCTTTACAT
CCTCCACCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_n11.b1 MSMg01no181_n11.b1 CHROMAT_FILE:
MSMg01no181_n11.b1 PHD_FILE: MSMg01no181_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
         (442 letters)



>mm_chr2_84694658_84695500
          Length = 843

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/445 (98%), Gaps = 5/445 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcagattccccagctctgcttttgcacctgagccacctgtttgcagatattccttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 201 ggcctcagattccccagctctgcttttgcacctgagccacctgtttgcagatatt--ttt 258

                                                                       
Query: 61  tt---aactcattgagcaagcacatactaggtggtcaacatgtacttgttactattaatg 117
           ||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 259 tttttaactcattgagcaagcacatactaggtggtcaacatgtactttttactattaatg 318

                                                                       
Query: 118 gtagtattctctttggagatggtgtcagagtaggagacaccaccaccactcctgaaatag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtagtattctctttggagatggtgtcagagtaggagacaccaccaccactcctgaaatag 378

                                                                       
Query: 178 tggtaaatgttacatggaccaaaagaggaggctgccaagaaatttagcgtactggttttg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tggtaaatgttacatggaccaaaagaggaggctgccaagaaatttagcgtactggttttg 438

                                                                       
Query: 238 gttggcggtggggtggggaagtcaacctgattgacagctttccccagccccttttcaatt 297
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 439 gttggcggtggggtggggaagtcaacctgattgacagctttccccagtcccttttcaatt 498

                                                                       
Query: 298 cagcagcagccggaggtggttctgcacagcctagcacatatgtatggtaatagtcaaata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagcagcagccggaggtggttctgcacagcctagcacatatgtatggtaatagtcaaata 558

                                                                       
Query: 358 gctggcattcattgagtaactactgtatgtacttactgccaaatagctgtatgatataga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctggcattcattgagtaactactgtatgtacttactgccaaatagctgtatgatataga 618

                                    
Query: 418 tgctattaccaactctgctaatgac 442
           |||||||||||||||||||||||||
Sbjct: 619 tgctattaccaactctgctaatgac 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)