BAC Information

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BAC

Clone NameMSMg01-182C04
Chromosome2 (Build37)
Map Location 132,068,787 - 132,069,158
singlet/doubletsinglet
Overlap gene5730494N06Rik
Upstream geneD430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521
Downstream genePcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182C04.T7 (MSMg01no182_c04.b1)MSMg01-182C04.TJ (MSMg01no182_c04.g1)
ACCAG375103AG375104
length712722
length of high quality
(start - end)
589 (45 - 633)377 (305 - 681)
definitionCHROMAT_FILE: MSMg01no182_c04.b1 PHD_FILE: MSMg01no182_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:47 2005CHROMAT_FILE: MSMg01no182_c04.g1 PHD_FILE: MSMg01no182_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCTCTTCCTCTGAAGAATATGGGCTTCCAGGCAGCTAGAATGAG
GGTCTTAAAGCCCACACCCACAGTGATACACCTACTCCCACAAGGCTACA
CCTTCTAATAGTACCACTCCCTGGACCGAGCATATACAAACCATCACAGG
GACTGAGAGGTAGTGCTATGTAGGCAGTTAGGAGAGAAAAATCATCAACA
ATCCCACCCAGATGTGGCCCCTGTGTGCTACAATACTGAACTTCCTGGCA
AGACATGCCAGCCAATATAGCCATGGCATGAATGATCCAGAAATAACCAA
CAGCTTCTTGGTTACGTTTTAAGCTTGCTGCACAGGAAGAAAACATGGCT
GATACTGTAGACCTGATCAGAAGGCTACAGCTAGTCATAGGGAGGTCACA
GGCTGCATGGAGAAACATACTGCTTGTGCTTTTCTAAATCGAAATGTAGT
AAACTACCTTCTAACTATTTGTGTTTAAACCCATAGACTAGTGCTGCTCT
CAGGCTTGGTTGGAAAGTCTGTTTTTGGCAGTGGGCAATCGTCAAAGTAG
GGATTCACAACTGAGCAAAGTTCTGGTAATCGGTGACTATAGAGTGCTTG
TCCCTAAACAGGACATCTATGCCACCCACTCTGAAACCCCAGGAACATCC
AGAGTAAGTCCN
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGAGAGACAGCTGTTGGTGGAAT
TAGCACGTATTATAGGATGAAGCAGAGGACGAAAAAAGGCTGCGGAGTGT
GAGAATATTGGAATGTTCTTGATCATGTGCCCACATGCATTTCCTAGCTA
CCTTCTCGTGGCTCACTAACCTGTGACCTGTGATCACTGGCCCACATACT
GGGCGTCGGAATATGCATGCATGCACGTATGTGAGTAAGTGAATCTTAGA
AGACAAAAACAAAAGAAAACAACAACAATAAAAACTAACCCAAATAGTGC
TTCAGCTGTAATGACATGTGTCAATTGTCACCTCAGAAACTGGATGCTTT
ATTTTTGCTGCTTGTAACTGCGTAAAGCACCAAAAAGGAACTACATTTTT
TCTAGTGTGAGAGAGAAAAAAAATGGATCTGTATTATGGTTAGAATATTG
CTTAACTTCTCTCAATGATGACCTATAACTTTAAAATAAAATAAAATAAA
ATAAAATAAATCTTTTCTTCCCTCCCCCAAAAAGAATACTGCTTAGGGTC
ACACCCCACCCCTGCAAGACAGGGTTTCTTTGTGTAACATTGGCTATCCT
GGAACTCAGAGATCCATCTGCCTCTGCCTCTGCCTCCTGAGTGNTAGGAT
CAAAGCGGCCTTCTATCATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_c04.g1 MSMg01no182_c04.g1 CHROMAT_FILE:
MSMg01no182_c04.g1 PHD_FILE: MSMg01no182_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:48 2005
         (377 letters)



>mm_chr2_132068587_132069363
          Length = 777

 Score =  675 bits (349), Expect = 0.0
 Identities = 368/377 (97%), Gaps = 5/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaacaaaagaaaacaacaacaataaaaactaacccaaatagtgcttcagctgtaatga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaaaacaaaagaaaacaacaacaataaaaactaacccaaatagtgcttcagctgtaataa 260

                                                                       
Query: 61  catgtgtcaattgtcacctcagaaactggatgctttatttttgctgcttgtaactgcgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 catgtgtcaattgtcacctcagaaactggatgctttatttttgctgcttgtaactgtgta 320

                                                                       
Query: 121 aagcaccaaaaaggaactacattttttctagtgtgagagagaaaaaaaatggatctgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaccaaaaaggaactacattttttctagtgtgagagagaaaaaaaatggatctgtat 380

                                                                       
Query: 181 tatggttagaatattgcttaacttctctcaatgatgacctataactttaaaataaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatggttagaatattgcttaacttctctcaatgatgacctataactttaaaataaaataa 440

                                                                       
Query: 241 aataaaataaaataaatcttttcttccctcccccaaaaagaatactgcttagggtcacac 300
           |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaaataaa-----tcttttcttccctcccccaaaaagaatactgcttagggtcacac 495

                                                                       
Query: 301 cccacccctgcaagacagggtttctttgtgtaacattggctatcctggaactcagagatc 360
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 496 cccacccctgcaagacagggtttctttgtgtagcattggttatcctggaactcagagatc 555

                            
Query: 361 catctgcctctgcctct 377
           |||||||||||||||||
Sbjct: 556 catctgcctctgcctct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)