BAC Information

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BAC

Clone NameMSMg01-182F15
Chromosome2 (Build37)
Map Location 145,666,204 - 145,666,486
singlet/doubletsinglet
Overlap geneRin2
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F15.T7 (MSMg01no182_f15.b1)MSMg01-182F15.TJ (MSMg01no182_f15.g1)
ACCAG375257AG375258
length786705
length of high quality
(start - end)
---286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no182_f15.b1 PHD_FILE: MSMg01no182_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005CHROMAT_FILE: MSMg01no182_f15.g1 PHD_FILE: MSMg01no182_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAAACACGACAAAACACAAGCCGGCNGGGGGGGGTGTGTTGGGGGGTT
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGATTTTCCCCAGAACAGAGATAGATGTTCTCCTCGGACATGT
CTACTCGCCTACATGTCCTTTTATGCCCAATGGATATATGCTCTGAACTA
GTCCACCCAGATCACAGCGCCTGCTATATCTAATTCTTCCTGGCGTCACC
TATTACGGTCCTATCGGGGAACGCGCCCGTTCTATATATGTCGCATGAAA
ACTCTCGTGTAGATCTACTTACGCAAAGCCATGGACACGCACAGAGGCTT
AATATCTAGATGAGACTGCAGAATATTCTTGACAGCCAGAACGACCCTAA
TCAAAATAACACTGTGTTTTGACATTACTGGTCTTGACTGGCAGTTATAG
TAGATAATCACAGTAACACCCCCCATGTACGTGACAGAAGACCATACTCG
CTGGCCAATGGGAAATAGGTGAGGATCCATGCTCCTACGGCCAGCAGGGT
ATTGTATGTTGTGTGGGATAGGAGTATTGGATCCCCCGGGCGCAAGCCAG
AATAATCTTGTTATGAATCACCGAAGTGGGAATGGTTGACCCGTCGCGGA
CATTTTATCTAAATTTATTGATTGCGCCCCGCCACACATGGCCCCGCACC
TACGTTTCAGAAGATGCGCAGGGATATCTATCTCGCCCCACCCCCCTTCT
CTTCTCCCTCCCGCCTTTCTTTTCCCTTTTGTATTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCCAATACAGACCTATCTGAGAG
TAATAGAAACCAGTGACTTCTAAGACAGACAGACAGGTGTCTCTATGTAA
ATGAATGCTGACAGAGGCTGCATGGCTCAGAACGTTAGTAAGGCATCACA
TGATAAAATCCAGGCACTTAATGACATGGTCACAGTGTGTTGGCCCAAGG
GCCAGCCTCCAGGGTGGAAGCCTGAAGTCCCTCTCTTAGCTGGTCCAGAC
ATGTGAGACCTGGGCCAGCTCCCTTTCTGAGCATTACTGTTTTATTTGTA
AATGGTACTTTCATCACCACCCGCCCGACTCTGCCTTAAGGCTCACCTGC
CTGAGAGCAAGAAAGCACCCCCAATGTATGCTAAGTCCAGTGGAAGAAAG
ACCATTAGGAAAAGAGGAGGGGTCCAGCAGGACACAGGGGGTTTAAATGG
AGGAGGGACGGAAAAGAGTAACAGAAGACAAGATATTGTATATTTTCTCT
CATGTGAAACATCTATTTTTAACAATGCACACATATGATATGAAAGCCCA
AGGCACTACTTGAGTTTAGGTTTCTCTTTAAGCAACCTTCTAATACCTTT
CTTTCTTCTCTTCCCTTTCACGTTTCCCAATTTCCTTCCTTTTTCCTTTC
CCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f15.g1 MSMg01no182_f15.g1 CHROMAT_FILE:
MSMg01no182_f15.g1 PHD_FILE: MSMg01no182_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:04 2005
         (286 letters)



>mm_chr2_145666004_145666689
          Length = 686

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccaatacagacctatctgagagtaatagaaaccagtgacttctaagacagacagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cacccaatacagacctatctgagagtaatagaaaccagtgacttctaagacagacagaca 424

                                                                       
Query: 61  ggtgtctctatgtaaatgaatgctgacagaggctgcatggctcagaacgttagtaaggca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 ggtgtctctatgtaaatgaatgctgacagaggttgcatggctcagaacgttagtaaggca 364

                                                                       
Query: 121 tcacatgataaaatccaggcacttaatgacatggtcacagtgtgttggcccaagggccag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 363 tcacatgataaaatccaggcacttaatgacatggtcacagtgtattggcccaagggccag 304

                                                                       
Query: 181 cctccagggtggaagcctgaagtccctctcttagctggtccagacatgtgagacctgggc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 303 cctccagggtggaagcctgaagtctctctcttagctggtccagacatgtgagacctgggc 244

                                                      
Query: 241 cagctccctttctgagcattactgttttatttgtaaatggtac 283
           ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 243 cagctccttttctgagcgttactgttttatttgtaaatggtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)