BAC Information

Click to search

BAC

Clone NameMSMg01-184O22
Chromosome2 (Build37)
Map Location 180,197,666 - 180,352,492
singlet/doubletdoublet
Overlap geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184O22.T7 (MSMg01no184_o22.b1)MSMg01-184O22.TJ (MSMg01no184_o22.g1)
ACCAG377070AG377071
length730756
length of high quality
(start - end)		305 (62 - 366)134 (77 - 210)
definitionCHROMAT_FILE: MSMg01no184_o22.b1 PHD_FILE: MSMg01no184_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:30 2005CHROMAT_FILE: MSMg01no184_o22.g1 PHD_FILE: MSMg01no184_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,352,192 - 180,352,492)(180,197,666 - 180,197,798)
sequence
NTTTATTAANNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTCATGTTTTCTCTCTAGTGTTGAAATTC
CTCAATTTCCAAGGATTTTAAGAACAGGTGGAAATGATGTGCAAATTATA
TCAAGTCCATCTGCATACCAGAGTTTTTAAGGCTAACCTTGAAGATGACG
ATAGACTCAGAGAATCGCTTCCCATACAGATTCTTTTCTTAAAGCTACTT
TTGGGAAGGAGGACGCTATTGGCCAATCAGTCAGCACCAAGTGGAACCGG
GGAGGGGGGGTTTCAAACTTGTCACCAGGGCAACATATGGCAAATACATG
AATTCCAATGGGNTTTGGATTTGGCTGGTCCCNANACGAANCCCCAGNAG
GGTATTACAACCCCAGCTTGGGTCTGACGCCCCAAAAAAAAAAAAAAACA
GTTGTGGCGGGGTTGCTCCAATAGCTGTGACATCCCCCGGCCCCATCTTA
GGTCCGACCTATTTCCCAAATCTTTTTGCCTTTGCTCCACACATACATCA
TTTTTATCTCTACTATTTTCTCTTTTTTTTTAATATACACATAATATTCC
TCCTCCTTTCTCCCTTTTTTTTCCCCTTTAAATATTTTTAATCTCTTTTT
ACTCTCCCATCTTATCTCCCCCCCTCTCTTACTTCTCTTTTTTCACCTTT
CTCTTCTTATCTCTACTTTCTTCTACCCTC

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTGGTGGCTTTCGTTTTCAG
GGAAGAAATCCTGTTTCCTTTTGTGTGGTGCTGATCACAAAACTGCGGTC
TGTTGCAGTATACCCAATCTGCCTGTGTAGTCCTGTGTGGTCCCTAGCAG
TTGTCGTGGNATAGGGAGAAAAGAGNACAGTGGNNGGNAGGNAAACCCGA
GTTTAAAGGAAAAGAAAAAAAACTTGGGAAACAAAAAACTTTTTTTTTTT
AAATCTCCCTGTGCCCAAATATTCTGCTGTCANTTTCACCCCCAAGTNAA
AAAGTTTTTTTGTTTTTTCCCNAACANAACCCCCAAAAAAAANCACACGN
NNGTTTTTTTTTGGTTGGCCCCCCAAAAAAAAAAAAAAAACTCTCNNNNN
AGGGATGGTTCNNNNCACGAACATATTAACTATTTTTATTTTTNNAAAAT
CTATTGAAAAAAAAAAAAANAACTTTTTTTTTTTTTCTTTTTATGACATC
TTATNNNANNNANNNNANNCNNNATNNNNNNNNNCANNNNTNNNANTNTT
TTTTTTTTTTTTTTTGCATGTCTGTGNNNNNNNNNNNNANNNNAANNNNN
NNNNNNANNNNTAAANAATAAAAANNNANNAAACAAAACACAACAATAAA
AATACCANATATTCCCTCTTTTTTTTTTTATCTTTTNGCTTTTANNNNCC
TTTTNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_o22.b1 MSMg01no184_o22.b1 CHROMAT_FILE:
MSMg01no184_o22.b1 PHD_FILE: MSMg01no184_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:30 2005
         (305 letters)



>mm_chr2_180351992_180352696
          Length = 705

 Score =  561 bits (290), Expect = e-164
 Identities = 298/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatgttttctctctagtgttgaaattcctcaatttccaaggattttaagaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattcttcatgttttctctctagtgttgaaattcctcaatttccaaggattttaagaac 442

                                                                       
Query: 65  aggtggaaatgatgtgcaaattatatcaagtccatctgcataccagagtttttaaggcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtggaaatgatgtgcaaattatatcaagtccatctgcataccagagtttttaaggcta 382

                                                                       
Query: 125 accttgaagatgacgatagactcagagaatcgcttcccatacagattcttttcttaaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttgaagatgacgatagactcagagaatcgcttcccatacagattcttttcttaaagc 322

                                                                       
Query: 185 tacttttgggaaggaggacgctattggccaatcagtcagcaccaagtggaaccggggagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tacttttgggaaggaggacgctattggccaatcagtcagcaccaagtggaatcggggagg 262

                                                                       
Query: 245 gggggtttcaaacttgtcaccagggcaacatatggcaaatacatgaattccaatgggntt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 261 gggggtttcaaacttgtcaccagggcaacataaggcaaatacatgaattccaatgggctt 202

            
Query: 305 t 305
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_o22.g1 MSMg01no184_o22.g1 CHROMAT_FILE:
MSMg01no184_o22.g1 PHD_FILE: MSMg01no184_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:30 2005
         (134 letters)



>mm_chr2_180197466_180197999
          Length = 534

 Score =  250 bits (129), Expect = 3e-71
 Identities = 132/133 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggtggtggctttcgttttcagggaagaaatcctgtttccttttgtgtggtgctgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggtggtggctttcgttttcagggaagaaatcctgtttccttttgtgtggtgctgatc 260

                                                                       
Query: 61  acaaaactgcggtctgttgcagtatacccaatctgcctgtgtagtcctgtgtggtcccta 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acaaaactgcggtctgttgcagtatacccgatctgcctgtgtagtcctgtgtggtcccta 320

                        
Query: 121 gcagttgtcgtgg 133
           |||||||||||||
Sbjct: 321 gcagttgtcgtgg 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |