BAC Information

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BAC

Clone NameMSMg01-184P12
Chromosome2 (Build37)
Map Location 67,953,356 - 67,985,907
singlet/doubletdoublet
Overlap geneB3galt1
Upstream geneGm1322, Cmya3, LOC621171, LOC227995
Downstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184P12.T7 (MSMg01no184_p12.b1)MSMg01-184P12.TJ (MSMg01no184_p12.g1)
ACCAG377097AG377098
length743773
length of high quality
(start - end)		685 (59 - 743)297 (71 - 367)
definitionCHROMAT_FILE: MSMg01no184_p12.b1 PHD_FILE: MSMg01no184_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:33 2005CHROMAT_FILE: MSMg01no184_p12.g1 PHD_FILE: MSMg01no184_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,953,356 - 67,954,035)(67,985,611 - 67,985,907)
sequence
AAAANAAAATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAGTATTCAGTAACAAAAATGAATTATTGTTGA
TCTCACGGTTAGCTCTAAGCTTATACAAGAATATCTGTTTTCTAAGTTGG
CAAAAACTAAACAGGCCAAGCACATAGTTGTCTCTGAAGGAGACTTTGTT
GAAATTAGTATTACCACCTTTTCTTTCCAGCGCTATTGAATTCTGCTCTA
ACTAGGAAGGAGGAAATAATTTTTTACATGAATGGACTGTAATTTGACAC
GTGTTTTTGACTGGGATATTGTTTATAAGCTCTAGAAAACAATGCTAGTT
TTAGAAAGGATTACTGTTTCAAACAACAACTTCATTTGAATGCCAGTTTG
GTTTTTGTAGCATCTTCATTGAATTTTTGAACTTTAAGCTCAACTGTCGC
TTTTATTATACGCTTCCAAAGTATATAGACATGTCACTCAGCAAAACAAG
TTAATAAATGAATTCATGAACAAATTAAAAAGAGAGTCTAATTTCCTCAA
AGAAATATATAGGGTCATTGATAACAGAGAATTCCATGTCATTTGGAACA
ACTCTGAAATCAGTATAACTAGGGTGGTTAGTTGGTAGTTTCCATGTTTT
GGTTTGTTTCACATTAACTGTAACCAGTGGACTTCAGAAAACAACATACA
AAGAAGAAAGATTTCTTTTGGTTGATAATGTCAGAGGTTTGGC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGTTCTATTTCCTAAACTCAGTTTCTTG
CCTTACATTAATATCACGCTATCTTGGTATATCAATTTATTTTGTATTGA
CTTCTAAAATTGTTTGATGCATGTTCTCCAAGTTTACTTATATATTTTTT
TAAATTGTATTGACTATTCAGTTCAAGGTTTCTTATGTTTCTATGTAAAT
TTTAAAGTCAAGCTTCCAATTAAGAGAAAAACAGTGAGGAGTTTAGCTAC
TCAATCTCTGCCACACTCATGAGATGTCTCCATTTATTTAATATTTTATT
AACCAGTAACTTATAACAGTATTCCATATATAGCTCTTAGACTATTTTTG
CTAGCAAGTCAAATATTTCAGTATTTTTGATGCTTTAGACAATGCACTGT
TTTAAAATTTCATGTTGAACTGTTTACTGCTATTATAAAGAATTACAAAT
GATTTGTATGTAGATCATATAAAACAGAGGCTCACTGACTCCACTGATGG
TGTCTGGTAGTTTGGAGAGTTTGTTTGGTGATTGGTGCTTGGCGGTGTTT
TGTGTGGGGTTGTTAGGGTGCCTGCNAGTGGGGAAGGGTGTTTGGGCGGC
GGGGGGGGGGGCTGAGGGGCGAAGTGGGGGCAGGGATGAGGGGTGATGTG
AGGAAGGGAGTGGGAAAAAAAGATATAAAGATAGATGTATGAAAATGGCA
GGGTGGTGGAGAGAAAGAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_p12.b1 MSMg01no184_p12.b1 CHROMAT_FILE:
MSMg01no184_p12.b1 PHD_FILE: MSMg01no184_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:33 2005
         (685 letters)



>mm_chr2_67953151_67954235
          Length = 1085

 Score = 1237 bits (640), Expect = 0.0
 Identities = 670/680 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcagtattcagtaacaaaaatgaattattgttgatctcacggttagctctaagctta 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcagtattcagtaacagaaatgaattattgttgatctcacggttagctctaagctta 265

                                                                       
Query: 66  tacaagaatatctgttttctaagttggcaaaaactaaacaggccaagcacatagttgtct 125
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacaagaatatctgttttctaatttggcaaaaactaaacaggccaagcacatagttgtct 325

                                                                       
Query: 126 ctgaaggagactttgttgaaattagtattaccaccttttctttccagcgctattgaattc 185
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 326 ctgaaggagactttgttgaaattagtattaccacctttgctttccagcactattgaattc 385

                                                                       
Query: 186 tgctctaactaggaaggaggaaataattttttacatgaatggactgtaatttgacacgtg 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 tgctctaactaggaaggaggaaataattttttacatgaatggactgtaatttgacaggtg 445

                                                                       
Query: 246 tttttgactgggatattgtttataagctctagaaaacaatgctagttttagaaaggatta 305
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 446 tttttgactgggatattgtttataagctctagaaaacaatactagttttagaaaggatta 505

                                                                       
Query: 306 ctgtttcaaacaacaacttcatttgaatgccagtttggtttttgtagcatcttcattgaa 365
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 ctgtttcaaacaacaacttcatttgaatgccagtttggtttttgtaacatcttcattgaa 565

                                                                       
Query: 366 tttttgaactttaagctcaactgtcgcttttattatacgcttccaaagtatatagacatg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttttgaactttaagctcaactgtcgcttttattatacgcttccaaagtatatagacatg 625

                                                                       
Query: 426 tcactcagcaaaacaagttaataaatgaattcatgaacaaattaaaaagagagtctaatt 485
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 626 tcactcagcaaaacaagttaataaatgaattcatgaataaattaaaaggagagtctaatt 685

                                                                       
Query: 486 tcctcaaagaaatatatagggtcattgataacagagaattccatgtcatttggaacaact 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcctcaaagaaatatatagggtcattgataacagagaattccatgtcatttggaacaact 745

                                                                       
Query: 546 ctgaaatcagtataactagggtggttagttggtagtttccatgttttggtttgtttcaca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctgaaatcagtataactagggtggttagttggtagtttccatgttttggtttgtttcaca 805

                                                                       
Query: 606 ttaactgtaaccagtggacttcagaaaacaacatacaaagaagaaagatttcttttggtt 665
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttaactgtaaccagtgtacttcagaaaacaacatacaaagaagaaagatttcttttggtt 865

                               
Query: 666 gataatgtcagaggtttggc 685
           ||||||||||||||||||||
Sbjct: 866 gataatgtcagaggtttggc 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_p12.g1 MSMg01no184_p12.g1 CHROMAT_FILE:
MSMg01no184_p12.g1 PHD_FILE: MSMg01no184_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:33 2005
         (297 letters)



>mm_chr2_67985447_67986143
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagttctatttcctaaactcagtttcttgccttacattaatatcacgctatcttggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttagttctatttcctaaactcagtttcttgccttacattaatatcacgctatcttggtat 402

                                                                       
Query: 61  atcaatttattttgtattgacttctaaaattgtttgatgcatgttctccaagtttactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcaatttattttgtattgacttctaaaattgtttgatgcatgttctccaagtttactta 342

                                                                       
Query: 121 tatatttttttaaattgtattgactattcagttcaaggtttcttatgtttctatgtaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatatttttttaaattgtattgactattcagttcaaggtttcttatgtttctatgtaaat 282

                                                                       
Query: 181 tttaaagtcaagcttccaattaagagaaaaacagtgaggagtttagctactcaatctctg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 tttaaagtcaagcttccaattaagagaataacagtgaggagtttagctactcaatctctg 222

                                                                    
Query: 241 ccacactcatgagatgtctccatttatttaatattttattaaccagtaacttataac 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccacactcatgagatgtctccatttatttaatattttattaaccagtaacttataac 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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