BAC Information

Click to search

BAC

Clone NameMSMg01-186E02
Chromosome2 (Build37)
Map Location 181,195,002 - 181,195,272
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
Downstream geneBC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E02.T7 (MSMg01no186_e02.b1)MSMg01-186E02.TJ (MSMg01no186_e02.g1)
ACCAG377995AG377996
length850780
length of high quality
(start - end)
278 (35 - 312)135 (76 - 210)
definitionCHROMAT_FILE: MSMg01no186_e02.b1 PHD_FILE: MSMg01no186_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:11 2005CHROMAT_FILE: MSMg01no186_e02.g1 PHD_FILE: MSMg01no186_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGCTGT
GCCTGCCCCTCCTTGAGGCAGGCCGCGGATAGCCCAGGGCGCCTCACGAT
TGGTTGGCCCAACCCCGGTTCAACTCCTCTACGTCCCTGGCCATCTACAG
GCTCACCCCCCTTCCCGCTGCTGCGCTTGAGATGTACGGTGGTGGCCTTT
AACCCCTACGCAGTTCAGCCGGGAATGCCCGCTCCAGGTTCTGCTCCTCA
GCGGATCGAAGACACTGGAGGCAAGAAGGACCTGCGGGCCTCACTGCACC
ACTGGGGGTGGGGTGAATATATCTATTTTTATTTCTTTATTAATTGAGAT
TTTTTTTTTTTCCCCCCCCCCCCCCCCCTTTTATAAGATTTTAACATATT
TTTTTCCGCCCCCCCCTTTTTTAAAAAAAAAAAATCCTTTTCTTTTGTTT
TTGCATTTATCTCTATTTTCTGTCATCTTATTATTTTCATATTTCTTCTA
TAAATTTAACCTTATCACTCACTTTCTTACTTTACCTTCTATTTTTATTC
TTATATCGTCAATCTCCTTAATATATTTTCATTTAGCTTTTATCTCTATC
CACATCTTACAAACTCAATTCTTTATGATTATCGTTCTATTTTTCCTCTA
ACTCCATCTCTATACTCTTTATTACTTTTATCACTATCACATTGCCTTTC
TATCTATGAAGATACATCCTATTCTCTCTCAATTTACGCCTCTTTTCGTT
CGTCTATGTATTCTATTTTCTCTCCTGTTTCTATTTCTCTCATATTTTCA
CTTTCTTATTTATATTCTAATGCGTTCTCTTTTTATATACACTTCTTAAA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTTGTAGACCAGGCTGACCTTGA
ACTCACAGAGATCCACCTGCTTCTGCTTTCCAAGTGCTAGGATTAAAGGC
GTGCACCACCACCACCCAACTGAAATTTGTTTTTATGGAGGGTTTATTGG
ATTTTTTTTNNNNNNNNNNGNNNNCNCTGCNCCCCCCCACTCCCCCCCTT
CTTATTGTTCCTCCCCTGTCCTTTCCCTTAATTTTTTCCATCGTCCCTGT
TCCTCTTTTTCCTCTCTTTTTTTATTTCCTTCTGTCTTCCCTTGTTCCCT
CTTTTGTTTTTTTTTTTCCCCCCCCCCCCCCCCTTGNTGTTTTTGTTGGG
TGTTGTTTTTTGTTTTCCCCCCCCCTTTTAAAAAAAAATCTTTTTCCTGG
GGCGCGTATCCCCTATTCACTCTCTCTTCTCCCCTCTTCTCCACCTCTTC
TTTATCCCTATTTCCATTCATCTTATTCTATCTATTCCCCCTTCTATTTT
TTCACTTGTTTCACCTTCCTCTTCCTACACTTCACCGCTTTATCCATATT
CGTCTCTCTTTTATCCTACCCTACCCCCTCCTCCTCTTTCCCTCCCCCTT
CTACTCCTGTGGTTTTTGTTTATTTCTTAGCTTCCGTCGTCCCCTTTTAT
TCCCTCCCCTTCAACATTTTATACTACTCATCAATACTCCTCTACCTTCT
TCTCTCCTCCCTACACGCCTTTTATGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e02.b1 MSMg01no186_e02.b1 CHROMAT_FILE:
MSMg01no186_e02.b1 PHD_FILE: MSMg01no186_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:11 2005
         (278 letters)



>mm_chr2_181194799_181195476
          Length = 678

 Score =  516 bits (267), Expect = e-151
 Identities = 270/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccgctgtgcctgcccctccttgaggcaggccgcggatagcccagggcgcctcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaattccgctgtgcctgcccctccttgaggcaggccgcggatagcccagggcgcctcac 415

                                                                       
Query: 64  gattggttggcccaaccccggttcaactcctctacgtccctggccatctacaggctcacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gattggttggcccaaccccggttcaactcctctacgtccctggccatctacaggctcacc 355

                                                                       
Query: 124 ccccttcccgctgctgcgcttgagatgtacggtggtggcctttaacccctacgcagttca 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 354 ccccttcccgctgctgcgcttgagatgtaccgtggtggcctttaacccctacgcagttca 295

                                                                       
Query: 184 gccgggaatgcccgctccaggttctgctcctcagcggatcgaagacactggaggcaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gccgggaatgcccgctccaggttctgctcctcagcggatcgaagacactggaggcaagaa 235

                                          
Query: 244 ggacctgcgggcctcactgcaccactggggg 274
           |||||||||||||||||||||||||||||||
Sbjct: 234 ggacctgcgggcctcactgcaccactggggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)