BAC Information

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BAC

Clone NameMSMg01-186O08
Chromosome2 (Build37)
Map Location 149,409,988 - 149,410,151
singlet/doubletsinglet
Overlap genenone
Upstream geneNxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10
Downstream geneEG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186O08.T7 (MSMg01no186_o08.b1)MSMg01-186O08.TJ (MSMg01no186_o08.g1)
ACCAG378433AG378434
length838730
length of high quality
(start - end)
170 (36 - 205)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no186_o08.b1 PHD_FILE: MSMg01no186_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:02 2005CHROMAT_FILE: MSMg01no186_o08.g1 PHD_FILE: MSMg01no186_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTT
CTCAGCATCTAATGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAGTGCATTACATTGATGGATTTCCGTATATTAAACCATTCCTGCATC
CTTGGCATGAAACCTATTTGGTCAGGATGAATGATTGTTTTGATTATTTT
TTTTAAATAAACATTTTTTTTTTTATCCTAGTCATCCTTTTTCCTTCTTC
TATGACCTCATTTCTATTCTCCTCTTTTCTCTTCTCCTTTAATGTTTTTT
TTTTTTTTTTTTCCCCCCCCCCCCCCCCCTAAATAACATTTATATTTTCC
CCTTCTTATTTTTTTCCCCCCCCCACAAAAAAAAAAATAAATTTTTTGTT
TCTCTCTTCTTTTCTTCTTATTATTCTACCACACTATTTTCTAATTTTAT
AACATTCTATACATCAATGCCNCTTCTCACTCAAACTCCCCCTCATCCCT
CTACTTCTCTTATCCTCTTTAACTTTTCTCTATCTACTTTTACTTCTTCT
TATTCTTTTCCTTATTTACTTCTCTACTCCTCTCTATTCCATTATCTCTC
TTCCATTCCTCTCCTTCCTTTCTCTTATTTTACAAATTTATATAACACTT
ATTCCAGTCTTTTTTATTACTTTTTCTCTTTTTCTCTTAATTATCACTAT
TTTTTTATTCAATTTCAAAACATCTCTCTACTCTTATATATAATCATACA
TTTCTTTATTCTTTACACCTTTTTTTTTTTCTTATAAN
GCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCCTGCTTCATTCCAATTTGTTCTC
TAGCTCCCCATGGTTTGGCAGGGTCTACTACTCTTCAGGGACATCTTGAA
CATTCATTTCTGCAGTGTCTGGTTTTGATAATTGGTGATCCCTTTACTGA
GTACTAGCAGTTGAATGCTTGAAAAGAACTTACTAGAGCAGGACCTAGGA
AATTAGTCTGAACAGGTTAGAGGGTGTGCCAGAGAACCGGACAGCTTCTG
GGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCA
GACAACCGTTTACCATCCGGACGACAGGACAGGTGTCCGCCAGGCTCGGG
AGACGGCCTCAGAACCACAAACTAAACAGGGACACACTGAAACTAACAGA
AGTGATGAAACAAATGGATCTGACAGATACCTACAGAACATTTTATCCTA
NAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAA
ATTGACCACATAATAGGTCACAAAACAGGCCTCAACAGATTCTAAAATAT
TGAAATTGTCCCATGTATCCTATCAGATCACCAAGCACTTAAGCTGATCT
TCCATAACGAAAAAAATATAACAGAAGGCCTCCACTCCCGTGGGTAACAT
GACAAACATCTTCTCAAGAAACCCTTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_o08.g1 MSMg01no186_o08.g1 CHROMAT_FILE:
MSMg01no186_o08.g1 PHD_FILE: MSMg01no186_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:02 2005
         (285 letters)



>mm_chr2_149409789_149410473
          Length = 685

 Score =  310 bits (160), Expect = 9e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctgcttcattccaatttgttctctagctccccatggtttggcagggtctactactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcctgcttcattccaatttgttctctagctccccatggtttggcagggtctactactct 304

                                                                       
Query: 61  tcagggacatcttgaacattcatttctgcagtgtctggttttgataattggtgatccctt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 303 tcagggacatcttgaacattcatttctgcagtgtctgtttttgataattggtgatccctt 244

                                                       
Query: 121 tactgagtactagcagttgaatgcttgaaaagaacttactagag 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tactgagtactagcagttgaatgcttgaaaagaacttactagag 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)